CI01000000_03073311_03109669 (UNC5A)


Basic Information

Item Value
gene id CI01000000_03073311_03109669
gene name UNC5A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 3072290 ~ 3109818 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_03073311_03109669.mRNA
CTATAAATGTCGTATTTATGATAATCCGGGCAGCTTTCAGTGAACGATACTGTTTGAAGTTAATAATAAAGAAACATGGAAGAATGAGAGCGGGATGTGATTGATATTAAAAAGAAATATTAAAAGCTCCATGTGCTGCGAAAGAGAACTGAATCTGCTAACTGACAGGATGCTTTCTGTGCGTTCTCTCCGAGCGGAACATGGACAAGCGTAGCAGCCACAGAATGTCAAAATGGCCGCCTTAGCACATGTATAATGATATGTATAATGTTAATATAGTATAATATTAAGCAGCACAATTGATTTCAACATTGATAATAAGAAATGTTTCTTGAGCAGCAAATCAGCATATTAGAATGATTTCAGAAGGATCATGTGACACTGAAGACTGAAGTAATGATGCTGAAAATTCAGCTTTTCCATCACAGGGATAAATTACATACTAAAATATAGTGAAACAGACAACAGTTATTTTAAATTGTAATAATATTTCACAATATGTCTGTTTTTACTGTATTTTAAACAAATAATTGCATCCTTGTTAAGCACAACATTAAAAAATCTCACTGACCCCTAATTTGTGAATGGTATAGTGTAAATTCTTAAGGGCACAGCAGTAGAACAATCTGTTTAATACCATAATTAAACTAAATTGTTTTCTACTGTACTTTTAAGACATCTATCTTTTCAGAGAGGGTAGAGAATGACTGTTTTGATTTAAAAAAAAAAAAAAAAAAAACGATTGGACTTTAGGGGAAAAATAAAATACTATATCAGTGTTGAAAATGTTATATTTATAGCTGTAACTACTTGAATCCGTGTTAAATGCATAGCTAAAAAACTATTTTCACATGTGGGGGTTGATGTGCGTGCATACAATATGTGAAACTGTGCAGCTGCATTTAGTTGAGTGTATCATAGAGACAGGCGTTGCATCCATCAGTATGACAGCATTCATATTGCATAAGCTGCATTATTTAATACACCGCAATGTCAAAACCTCTGTATGTGTGTGAATGACATGAGCAGAGGGCAGGTGTGTGGAGTTTGTGCATGCATGTTAGAGCACATGGGTGTTGCTGAGATAATGGATGGCGGTTGGAGCGAATGGAGTAAGTGGTCGCCCTGCGGAGCCGACTGCACCATGTGGAGGAGTAGAGAATGTACCCAACCTACGCCTGGCACTGGAGGGAAGGACTGCCAGGGCCTGGATCTTCAGTCCCTCAACTGTACCAGCGAGCAGTGCCCTCAGACCTGGGATGCATCAGTGAGAGTCCCATTAACCACTAGAAAATGTAGGAAGAACGAAGAAAGGGCACCTAGGAGCTCTTCTTCCCTCAAACAACCTTTCCCGTTCCTGTTGTTCTTCTCTTCTTTTAATGATGTTAAACCTCTCAGTCCTGCAGCTGCCATTGTCATAGCACCACAGCAGCATCGACATCGGCATCCTCAGAAGCAGCAATGCAAAAAGGGAGCAAGGGTGTGGGAATCTGATGTCGAAAGCAGATCAGCTGCCTCTCTCCCCACCGCCTCCATGTCAAGGGGAGGGGAGAGAGAGCGCTTGAATGCGGGGCAGAGACGAGCGGCGTCAGGTGCTGAGGATGTGGCTCTGTATGTGGGAATCGTGGTGGTGGCTCTCTGTCTGACTTTGCTGCTGATCATACTGGTGCTGGTTTACCGCAGGAAGAAGGAAGGTCTTGATGCAGATGTGGCCGACTCCTCCATCCTCACCACTGGCTTCCAGCCCATGGGCATCAAGCCCACCAAGCCAGAAAACTCTCATTTGCTCACCATCCAGCCTGATTTGACCACCACCACCACTAGCTACCAGGGAACTCTACGTTCTCGACATGAAGTCGCCGGGAAGTTCTCCATGAGCAACGGCCCCCTCCTGGAGCCCCTTCCCAATGGCTCCCACACGCTGCACAACGGCAAACTGCCCAGCGACCCCAACGACTTCATGAACCGCCTTTCTTCTCAGACATATTTCAAAACGCTACCGAGAGACAACGTCAACACCTCCTACGGCACTTTCAATTTCCTGGGTGGCCGCCTAACCCTCCCCAACACTGGATACCTCACTGCATATTCTACGAGCCGAGCCAGTGGCTTCATTGTCAGCCGTGGCACTGTAAGCCGATATGCAGCGTGCACATTCATAGTGCCTGCAACTCTATCCACTCCAAGGACACCACCAGAGACAGAAAGTGAAAGAGTTTTTGAAGGAATCAGCCTGCTCATCCCGCCAGAGGCCATTCCCAGAGGGAAGATTTATGAGATTTATCTCACCATTCAGAAGAAGGAAGACATGAGATTGCCCCTGGCTGGGTGTCAGACATTGCTGAGCCCCGTGGTGAGCTGCGGACCACCCGGTGTGGTGCTCACCCGGCCAGTCATCCTCAGCATGGACCATTGCTCTGATGCGTGCCTGGAGAACTGGGCCATCCGTCTCAAGAAGCAGTCATATGAGGGAACATGGGAGGATGTACTTCAGCTGGGTGAGGAAGTGGTGTCGGAGCCGTACTACTGCCAGCTGGAGGCGGAGACGTGCCGGGTGTTTACTGAGCAGCTGGGCCGTTTTGCTCTGGTCGGGGAGTCCCTCAGCATGGCTGCCGCTAAACGGCTAAAACTGCTGCTGTTTGGTCCCGCCTACTGCTCCACGCTGGAGTACAACATCCGCATCTACTGCATGGACGACACACAGGACCTACTAAAGGAATGGGCCACTCCAGGGGAACCTTTATACGTGAACGGACTCAGTCATGCAATGCTCTCGTGTAGAGCTGCTTTCCATGAATTCGCCCCATTTGCATTTTTCACTCCCCTCAACTGCACAGACCGTTGTGATGGCCGTTCTGATGGCAACAAATGGCCTTGCCGTACCAACCCCACTGAGACGAAAACATTAGACGAGGTGATGCAGATGGAAAGACAGCTGGGAGGTCGACTGATTGACGAGCCTCACGTCCTGCTCTTCAAAGACAGTTACCACAACCTCCGCCTCTCAATTCACGACATGCCACAGGCGCACTGGAGGAGCAAACTACTCGCCGGCTATCAGAGACAAAGAAACTATTTTCCTGTTCTGTTTGAAAATGCCAACGACAATAGATTTAGAAGAGCTTTCATAGACTCGCACCGGCAGCCACAGCATCATAAATCATTAGGTGTTGGACTTTTTCTTTTGTCTGTTTCTCTTACTGACAGTCATATTCAGCTGGATCTATTGTTTGCAAGTGCAGAACTTTTTTTAATGGAACGGAAGCTGTTTATTATCTACCGAGTGGCAGAATTCTTCTTGCAAGTTTATTTATGTCAGGAGATCCCATTCTACCACATCTGGAGCGGCTCTCAGCGGACCCTGCACTGCACCTTCACACTGGAGAGACAGAGCCTGAGCACCTGTGATCTCACCTGCACACTGTGTGTGTGGCAGGTAGAAGGAGAGGGACAGAGCTTCACCCTGGACTTCAACATCTCAAAGGACATCAGACCATTGGACTCTGATTTCCTGTTGATGGACAACTGTACCCCTGCCCTTGCTGGTCCGAGCGCATTCCAAATCCCTTACCTCATCCGACAGAAGATCTGCAGCAGTCTGGACACCCCCTGTCCCAACGGAGCAGACTGGAGACTACTGGCCCAGAGACTGAAGCTTGACAGGTAGGATAGTAATGGCAATGGTAGAAGTTACCATCTAAGATCGGAAATGGATCCTGTTTAACAAAATCTGAGGATTCTGGTCATGGAAAATGTTTTTTTGCAGAGTGCCAATATCTAGAGAAGATTATCTCGGTGCGGTTCTGTACTTGCATA

Function

symbol description
unc5a Predicted to enable netrin receptor activity. Predicted to be involved in anterior/posterior axon guidance. Predicted to act upstream of or within netrin-activated signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; and trunk. Orthologous to human UNC5A (unc-5 netrin receptor A).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_03073311_03109669.mRNA True 3816 mRNA 0.47 18 3072290 3109818

Neighbor

gene id symbol gene type direction distance location
CI01000000_03044838_03057977 NA coding upstream 13720 3044512 ~ 3058570 (+)
CI01000000_03011002_03017021 NA coding upstream 55259 3010654 ~ 3017031 (+)
CI01000000_02660983_02661759 NA coding upstream 410419 2660983 ~ 2661871 (+)
CI01000000_02652927_02658258 NA coding upstream 413996 2652927 ~ 2658294 (+)
CI01000000_02639274_02651177 DDX41 coding upstream 420728 2639274 ~ 2651578 (+)
CI01000000_03163645_03170599 CLTB coding downstream 53339 3163157 ~ 3171011 (+)
CI01000000_03178021_03180730 NA coding downstream 68203 3178021 ~ 3180812 (+)
CI01000000_03184726_03189468 FAF2 coding downstream 74862 3184680 ~ 3189468 (+)
CI01000000_03220166_03232503 NA coding downstream 110348 3220166 ~ 3232503 (+)
CI01000000_03232984_03233709 NA coding downstream 123166 3232984 ~ 3233989 (+)
G1523 NA non-coding upstream 133262 2923688 ~ 2939028 (+)
G1661 NA non-coding upstream 193420 2878591 ~ 2878870 (+)
G1645 NA non-coding upstream 243677 2828371 ~ 2828613 (+)
G1617 NA non-coding upstream 309732 2762341 ~ 2762558 (+)
G1604 NA non-coding upstream 372394 2699674 ~ 2699896 (+)
G1515 NA non-coding downstream 14680 3124498 ~ 3149400 (+)
G1682 NA non-coding downstream 101012 3210830 ~ 3211436 (+)
G1683 NA non-coding downstream 102005 3211823 ~ 3212955 (+)
G1689 NA non-coding downstream 131820 3241638 ~ 3241848 (+)
G1690 NA non-coding downstream 132785 3242603 ~ 3242897 (+)
G579 NA other upstream 1163482 1767917 ~ 1908808 (+)
G435 NA other upstream 1639436 1425121 ~ 1432854 (+)
G350 NA other upstream 2395353 671842 ~ 676937 (+)
G252 NA other upstream 2565218 503209 ~ 507072 (+)
G2774 NA other downstream 1343960 4453778 ~ 4454232 (+)
G2850 NA other downstream 1616168 4725986 ~ 4726482 (+)
G6811 NA other downstream 7095013 10204831 ~ 10321679 (+)
G6820 NA other downstream 7317405 10427223 ~ 10433018 (+)
G7018 NA other downstream 7868671 10978489 ~ 10980872 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location