XLOC_006576 (si:dkey-191g9.5)


Basic Information

Item Value
gene id XLOC_006576
gene name si:dkey-191g9.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 21712284 ~ 21739142 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012710
GAGGAGCCGAGCGGAGGAGAGGAGAAGCACGGCTACTTCAGGCGATATCTGGGCTGGAGCCATCCATCCTTCCTCGAGGAGGGCTGCCTCTGTAAATACACAGCGTTCGGAGGAGAAACCACAAGACCTGTAACGTTAGTCATGGCAGACATCGAATCTCTCAGCGAGGCCCTGAAAGGCATCAGTGTGAGCACAGAGCTGGTGGAGGAGGAGCTGAAGCCTCATCTGGATGTTCTGCTCAACCTGCTATTAGAGAAGAAGAAAGGAACAGCTGAGAAAATAGTGTCCAGTGGTGTTCTGCCTATCCTGACTCAAGTCCTGAGGAAGAAGAGTCCACTCACCTCTCAGGTCACTTTACTGGTGGCAGAGATGGCCAGAGAAGccacTGTGAGGGAGCACTGCATTGAAGCAGGTCTGGTGACCGCATTAGTGCCTTTACTGAAAAGCCCAGACCAGGACCAGCTGCTGCACACGGGTCGAGCTATCGGAAGGATCTGCTTCGAAAATGctGTTCAGCAGACGCAGCTGGTGGAGAATGGCGTAATCCCCAGGCTGGTGGCCATAATGCAGCAGTATCCTGAGAATGACCCACTGGTAAACGTCTGCCTGCTGGCTCTCTGCAACCTTGCTGAtgtggATGCTGCACGGGAGGCTCTGACAGAAGTGGATGTGGCTGAGGTTTTGACCCATCAGCTGAAACGGGCTCCAGATGCAGAACGACGGCATCTCATACTAGAGGTTCTTGGTTCACTGGGAGAAAGTGATGCCCTGAAACTGCAGTTTGTGGAGTCAGGCGTACCTGAGGCTCTTTCCGAAATGATTCGAACTCTTCAGGGTGGCTCTGACACACATGACCTCTGCAGCATCAAAGTGGCCTCAAACCTCATAGTGACTCTCCTACTGGGAGATGAATCAATGCAGAAATGTTTTGGAGAAGGGACGGGGATGGTGTATCAGGATGTTCTCGCTTGGCTGCAGTCATCAAACACTGAGCTGCAGCTGTCAGGCGCTCTTGCCATTGCTAATTTTGCCAGAAATGACAGCAACTGTGTGAAGATGCTGGAATTAGGAGTTGTTCCTCGTATTCTGGACCTGCTGGAGCAGCACGTAGCAGAGGGAGATGTTTCTGTGCAGCATGCTGGCCTCAGTGCACTTCGAAATCTCGCCATACCAGCCTCCAATAAGGTGCGTATGTTGGAGGATGGCGTCACAGAAAGAATTAGGAAACTTCTCTGCTCTGATATGCCCCCTGTCCAGTTCAAACTGCTGGGAACTTTGCGGATGATGGTGGACGGACAAGAGGAAGCAGCTTCAGTTTTAGGGAAGGATGAGGCTTTGTTAGCACGGGTCATGGAGTGGTGCGAGGCTAAGGATCACGCTGGTGTCAGAGGCGAGGCAAACCGCCTTTTAGCAGCTCTAATAAGACACAGCCGAAACCCTGAAGTTATCCACACTGTCATCAAGGCAGATGGAGTTCAACATCTCATCTCAATGGCAACCAGTGAGCATGTCATCATGCAGAATGAGGCGTTAGTTGCTTTGGCCATTGCCTCTGCAATAGACATTGAGGCAGTTCAAGAACCATTTCGAGATGCAGACCTTCTTCCCACCTTGCAAAAGATGCTAGATGACCCTGACGTGGCTGTGGAGGTCAAATTCAGTGCTTTAGGCCTGATCTGCAGTCTTGTCAACTCCACCATACTAAGGGAGCAGATAACATCTCTAAACCTGAGGGACACCCTGTCCAAACTGTCCAATCACACCAGCACAAAGCTGGCAAAGCAGGCCGACACGGTGATGGCTGTTCTTTCGGAGACCGCCTAGACTGACACGTCTTGCATAGTAATAATCcagacacacatacagacatCCTTGTGGGGGTATTTTCTGACAATTAATTCCCAAAAGGATAGTAAAACACTCGCACAGTTACCCCTTCTAGCTTGGCATATAGTCAGACCAAAGCAATATAAATTTACTCCACCAACTCTGGAGAA

Function

symbol description
si:dkey-191g9.5 Predicted to enable GTPase activator activity. Predicted to be involved in positive regulation of GTPase activity. Predicted to be active in cytosol. Orthologous to human RAP1GDS1 (Rap1 GTPase-GDP dissociation stimulator 1).

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0005829 cytosol cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-217 Predicted to enable GTPase activator activity. Predicted to be involved in positive regulation of GTPase activity. Predicted to be active in cytosol. Orthologous to human RAP1GDS1 (Rap1 GTPase-GDP dissociation stimulator 1).

Ensembl:

ensembl_id ENSDARG00000056080

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012710 True 1997 mRNA 0.51 14 21712284 21739142

Neighbor

gene id symbol gene type direction distance location
XLOC_006575 si:dkey-191g9.7 coding downstream 10961 21689267 ~ 21701323 (-)
XLOC_006574 sprn coding downstream 24108 21682770 ~ 21688176 (-)
XLOC_006573 elovl6l coding downstream 40153 21666521 ~ 21672131 (-)
XLOC_006572 mxtx1 coding downstream 52081 21656713 ~ 21660203 (-)
XLOC_006571 tspan14 coding downstream 61880 21638454 ~ 21650404 (-)
XLOC_006577 NA coding upstream 186559 21925701 ~ 21939965 (-)
XLOC_006578 BX649385.1 coding upstream 452219 22191361 ~ 22195168 (-)
XLOC_006579 mmrn2a coding upstream 880542 22619684 ~ 22646134 (-)
XLOC_006580 glud1a coding upstream 939942 22679084 ~ 22699024 (-)
XLOC_006581 psda coding upstream 1000896 22740038 ~ 22774491 (-)
XLOC_006471 BX537274.2 misc downstream 11447379 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 20886059 825904 ~ 826225 (-)
XLOC_006570 NA non-coding downstream 564902 21146114 ~ 21147382 (-)
XLOC_006569 NA non-coding downstream 632873 21076652 ~ 21079411 (-)
XLOC_006568 NA non-coding downstream 980396 20729834 ~ 20731888 (-)
XLOC_006567 CU633804.1 non-coding downstream 1164786 20546967 ~ 20547498 (-)
XLOC_006563 AL954359.1 non-coding downstream 1480534 20227045 ~ 20231750 (-)
XLOC_006582 CR550304.1 non-coding upstream 1038918 22778060 ~ 22784433 (-)
XLOC_006585 BX530068.1 non-coding upstream 1104688 22843830 ~ 22847484 (-)
XLOC_006595 NA non-coding upstream 1473617 23212759 ~ 23217818 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_11127163_11138849 NA coding CI01180000 null 11126317 ~ 11138849 (-)