gsk3bb (si:dkeyp-80c12.7,gsk3b,LOC107729358,LOC107569048,LOC107675878,LOC107684292)


Basic Information

Item Value
gene id gsk3bb
gene name si:dkeyp-80c12.7,gsk3b,LOC107729358,LOC107569048,LOC107675878,LOC107684292
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 24222123 ~ 24242004 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239800.1
CCTACGTGGTCCCGACGTGGCTCTAAATGCTAAGCCACATGGAAACGCATATCGCTGTTTATAATGCTTTTCGATTAGGTTTTATGTAAAAGAGGGTTTAGTGTCACAGTTGAGTTCACTTTGTTGCAATTAACCTACTCAGGAAAAACATAGTTAAGAACCTAAATACTTTGACTTTCTTCAGAATTTCTGATTGATTTACATTTTGGCTCAATGAGGCGTCATAAACGTAACTACAGTAGACCTATGTTTTATCGGCCAACGTtggcttttaaaacatttacaatactATCCGTCGAATCAAAAAACGCACGCGCCCGTTTGATTCGGGAACCAGCCGCTTTGaaagattcattcaaaagaTTCGATTCGGGGTTCGGAATGAATCGTTCGCGAATCTCGCTCACATCGCCAGCAGGAGGGATCCAGAGCGGCTGTGTCACTCGGAAGGAAACATCAGGGAATCtgtggctctttttttttttttttttaaatctaacgTTAGGGCTCAAGAAAAACCCAGCGACATCCTTCCCGTCATTTGGAAGAAAGATGCCtgaattgttttgctttttatcgGATGTAGATTAATATTCACGGGCTGATGCGGCCATGGCAAGTCACGGTGTCAGCCTTATCGATACCCGCCCGCAGCATTTGAAGGATACGAAGTGAAAGATAAATTATAATTGAGTAACGTTAAGTTTATCTGATCTCGGCAGACTTCATCTGTGCGCATGCGAGATAACAGTTCTGCGCTCTGGATATGCTGATGTGAACTGATACAGGCTGAATGCCTGTCCGAGATAATGTGATTTTGTCTTTCcatagaggttttttttctctaacaTTATCATCGGCGGGTCTAAAACCGGGGGCCGATCCGCGCCGTTCGCCTCGTAAAGTGTTCTTAAAAGGCGCGTTTGATGGTTAACGGACGGATATCTTCTTCATCTACAATCAGCTGACCGCCTCCGAATCCGTAGCATTGGACGAGATAACCCGGAGTTTTCCTCTATTTGCTTAAACAGAAGGCTGTTCGGAAGCCAGGTATTTCCTCTTGCGTTAAAGGAGCCCGTGAGGACCGCGGCCGAACAGGAACGGGATCTTGGAGATGTCAGGCCGGCCTAGGACCACCTCGTTTGCGGAGAGCTGCAAGCCAGTGCCGCAGCCTTCAGCCTTTGGCAACATGAAAGTCAGCAGAGATAAAGATGGCAGTAAAGTTACTACAGTGGCAGCGACCCCCGGTCAGGGACCCGACCGGCCTCAGGAGGTCAGCTACACGGACACAAAGGTCATCGGGAACGGCTCTTTTGGGGTCGTTTATCAAGCGAAGCTGTGCGACACCGGAGAGCTGGTGGCCATAAAGAAGGTGCTCCAGGATAAAAGGTTTAAGAATCGCGAGTTACAGATCATGAGGAAGTTGGATCACTGTAACATTGTGCGTCTGCGCTACTTCTTCTACTCCAGCGGAGACAAAAAGGATGAGGTGTATCTGAATTTGGTGATGGATTACGTGCCTGAAAACGTGTACAGAGTGGCCAGACACTACAGCAGAGCCAAGCAGAATCTGCCCATGGTCTATGTGAAGCTATACATGTACCAGCTGTTCCGCAGCTTGGCGTACATCCACTCGTATGGGATCTGCCATCGAGACATCAAGCCGCAGAACCTCCTGCTCGATCCAGAGACAGCTGTACTCAAACTCTGTGACTTTGGAAGTGCTAAGCAGCTGGTGCGTGGTGAGCCTAATGTTTCCTACATCTGCTCGCGCTACTACAGAGCCCCTGAGCTCATTTTCGGGGCCACGGACTACACTTCCAGCATAGaCATTTGGTCGGCGGGCTGCGTGCTGGCCGAGCTGCTGCTTGGACAGCCCATATTTCCTGGTGACAGCGGCGTCGATCAGCTGGTTGAAATCATCAAGGTGCTGGGAACTCCTACACGAGAGCAGATCCGGGAGATGAACCCCAATTACACCGAATTCAAGTTTCCACAGATAAAGGCACACCCGTGGACTAAGGTTTTCCGGCCGCGGACCCCTCCGGAGGCGATAGCTCTGTGTTCCCGGTTGTTGGAGTACACACCTACGGCCCGATTCACTCCTCTGGAGGCCTGCGCTCACACTTTCTTTGACGAGCTCCGTGAGCCCAACCTCAAGCTCCCGAACGGAAGAGAGCGGCCTGTGCTGTTTAATTTCACTACACAGGAGTTGTCCGGTAACCCGTCGCTGGCCTCCGTTCTCATTCCTGCACATGCTCAGAACCAGGCGGAAAACTCCTCCCAGTCTGCCTTGGCTGCAACAGGTGCCAACAGTGGCGATCGTGGTCCAAACGCCAACGCTGCCTCTGCTGCCCCTAATCCTGCAACTTGAACCCCATCCAACCGTTAATGGGCCACTTTTACGCTGCTGCTTATTAGCCACGCCCACTCCCCCGGGGGTCAAGGGCGTGGCTACAATTACCCGAAAAGCTCATTATTTGATGGATGCACCAAACCAAACCATCCCCAGtcattgtctttgtttttactattattctattttttaatttattgctcTGAAGGACGAATCGAGGGCTCAGAAACACCTCCTCAGGATCATCTGCGGTGATGTTTGACAATTCTCTTCCCCCtcgtctctctttttctctctctctctatatatacacacacttatataaaCCATCACACATACAAATAAGTTTTCACGTGTCTACTTCGACATTTTTTAAAGGGAAATCTGTATGCTGTAGCCGCTGCTTCTTTTATAATTGTCTCGGGCCCCTTCCTTGTCACCTGCGGGTGGAGACAAAGACTTAAAACGAGTATGAGCTGACACAGACAGCGCAGGTGGGATGCAAGAAAGCTGGTTTCTGATTGGTCGATACGACCGAATCCTGAACAGCGTGGACTGATTTCCAGGGCTTGTGTACATTCTGTAGACTATGTGAAATATATGCTAATGGCGTTTGCCTTTTTCCTCAGTACTGGGCAGATATGTTGTATGCTTAAGCTGTATGCTGCTGTGTACCTCTTTGTTTTTTCCACCACTTTTGAAGGAGTGACATTACCCATCCGTTTCCCGCTCGTCTTCCTCTTTCCCACTGTATAATACTTCACTGAACTCAGATGTTGCCACAGACGTAATATCAGATCATGTTCTGTGAGCAagagcgtgcgtgcgtgtgtgtgtgagcgcatgCTGTACGTCTTATGTCTATAAATACTGTATGCTGATTAGTGAGCTAAACGAATTAAGCAcgaaattaagaaaaatgatAATCAggaccttaaagggatagttcacccaaaagagaaaattctgtcattatcaCTCGCCTCATATCGTTCTAAACCGGTAAGACATCAGTTCATGTTCACAAcacaaattgagatatttttgataacatACAAGAGCTCTCTGATCATCCACAAAGACAGCTGAGGTCCGattaatgacaggattttcatttttgggggaactgtccctttaaaacagAACGCGTGAACGGGTTTTCAAATTCCAGCCTAAAGAAAGATGTCCGGTTTAGTTCCCAGACTCGCGTTATTTGTGTTAGAATTTAGCAGGAATGAGCgctgaaagcattttgaaaccCTTAACCTTCTGAACCGCTTCATCAGGGACGCAGGCTAACGAGGCAGGAGAAAATAAGACGGGAACGCTTTCTCTGCAGTGCGTTCGCTTCCTTTTATTGTTTTCGTTCCTCTTGTTCTCTTTAGCGCCCCCTAGTGTTAGTGGAAGCGCACAGCAGAGGCTGCTCTATCAAATGCCGTCGTAAATCAGTAGAGAAGAGTCACTTCAAACTGTTTATATCTCTCCCAAAAGTGCTGTTGAAAGAATATCTTTTCTGTTGCACGGTTAAAGcgacagttcacccaaacaagcatttttatttttattatcttttctaTACAACGCGAGATTTAATATAGAGAGTGTGATTAAGGGCTGTCAAACGCAAAAAAGTGACTCGCGTGCTATATTTAACGCCTTTTAAGTCGTATCTTCGTAtgtgagaaaaacacaaattaaattattaatttctaaCTCCctaactctcacacacacagtgttttgGTCGAATTTGAAGACACTCAGCATCGCTGAAAAAAGTGTTGATGTTACAAAGTGATTTgccatattttaatataaacgaTCAGAATGGGATTTTAAAGCTGGAGCTGAGAATGTGTTTGTAGCTTAAATGTTGATCTCCAAACACTTTCATGGTATGCAAACGATTGgttcgttttatttatttattccctACATGAAAGAAAAAGGACAATATGAAGGACTggaaatcataaaaacagtgtTAATTTTTGGGGGGGTGAATTGTCCCTTTAACGgttgtttttaatgaactcTTTAAACTAATACAATATCTATGAAGGTGCACCATTGCTCGCGTGTGTTAAAATgctcatttgtttaaataatctaTGCTTGGCGAACTtgagatgattttttttgttcaggtcAGTTCACTCTCACAGCAGGGAAAATAGACtaaacattgtttttctttcttttcctgtttGTCATTTCAGCTTAAAGCTCCAGAAGGACTTTTTCTTAACCATCCTCTCGAATTTATCGTGCGTTCTTTTAACcgacatgtaaaaaaaaaatctatttacagtgtttacaattagttttttttacgaTTATGTATAATACACGAGAATACGGTGTCGGGCATCTACggtattaaattattttgcaataatatttttgatttatgtttGGGGTTTCGTAAAACGCTTTCAGCAGCACTTAAAGGGAGCGATGTCGACCTTTACCATACGCTTCATTCAGATATGTTGGCGGTCTTGATGTAAAGTTTCTCAGTGACTCTTATCAGAGACGAATATGCGACGAAAAGGGAAATATACAAATGTGACTGTTGCCAGAGTTAAACAGCAGTCGAGCAACGGCCAACATAGCTATTAATTatggttttgtttcatttttctcttCACGTGACGGTATGTTACGCGTTCCGCTGATGTGTGTCCGGTCTCTTTTGTGTGTTCTGGTTCAGAGGAGTCACCTGATACTGTACTGCATTGAATAAAGTGTAGGTTAGCCTCACGAAAAA

Function

symbol description
gsk3b Enables several functions, including NF-kappaB binding activity; enzyme binding activity; and protein kinase activity. Involved in several processes, including pallium development; protein phosphorylation; and regulation of neuron death. Acts upstream of or within several processes, including ER overload response; peptidyl-serine phosphorylation; and positive regulation of protein export from nucleus. Located in several cellular components, including centrosome; nucleoplasm; and plasma membrane. Part of beta-catenin destruction complex. Is active in glutamatergic synapse. Implicated in Alzheimer's disease; amyotrophic lateral sclerosis; bipolar disorder; and schizophrenia. Biomarker of colorectal adenocarcinoma; degenerative disc disease; endometrial carcinoma; and schizophrenia.

NR:

description
uncharacterized protein LOC557882

GO:

id name namespace
GO:0003146 heart jogging biological_process
GO:0006468 protein phosphorylation biological_process
GO:0001947 heart looping biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K03083 GSK3B; glycogen synthase kinase 3 beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239800.1 True 5126 mRNA 0.44 11 24222123 24242004

Neighbor

gene id symbol gene type direction distance location
LOC122351487 LOC107675992,LOC107729366,LOC107569046 coding downstream 53487 24164545 ~ 24168636 (-)
LOC122330280 zgc:154142,LOC107676135,LOC107594422 coding downstream 120834 24091408 ~ 24101289 (-)
LOC122348966 LOC107675992,LOC107569046,LOC107729366 coding downstream 183467 24032892 ~ 24038656 (-)
neurl1aa neurl1,neurl1aa,LOC107676877,LOC107746052,LOC107746293,LOC107692176 coding downstream 1018987 23152502 ~ 23203136 (-)
setd4 setd4,LOC107676883,LOC107560975,LOC107603051,LOC107746057,LOC107692116,LOC107746281,LOC107603006 coding downstream 1308515 22909995 ~ 22913608 (-)
zgc:175214 zgc:175214,rn122,LOC107675969,LOC107684287,LOC108434705,LOC105891037 coding upstream 26074 24268078 ~ 24274231 (-)
LOC122351310 LOC107675897,LOC107574145,LOC107684327,LOC107706793,LOC107729342,LOC107684326 coding upstream 33725 24275729 ~ 24278863 (-)
zp3c NA coding upstream 39885 24281889 ~ 24284486 (-)
LOC122341589 LOC107729348,LOC107676039,LOC107729349,LOC107578077,LOC107729356,LOC107577678 coding upstream 42616 24284620 ~ 24291130 (-)
pkd2 LOC107675808,LOC107729350,LOC107684281,LOC107583176,LOC107594434 coding upstream 71307 24313311 ~ 24323076 (-)
LOC122350488 NA non-coding downstream 44474 24175891 ~ 24177649 (-)
LOC122351911 NA non-coding downstream 160911 24058013 ~ 24061212 (-)
G5568 NA non-coding downstream 485230 23735976 ~ 23736893 (-)
G5583 NA non-coding downstream 486520 23733174 ~ 23735603 (-)
LOC122346633 NA non-coding downstream 508666 23708413 ~ 23713457 (-)
G5763 NA non-coding upstream 258389 24500393 ~ 24501238 (-)
LOC122362739 gstcd,LOC107757010,LOC107684312,LOC107729368,LOC107676029 non-coding upstream 260969 24502973 ~ 24508467 (-)
G5769 NA non-coding upstream 309579 24551583 ~ 24551880 (-)
G5780 NA non-coding upstream 318835 24560839 ~ 24561453 (-)
G6019 NA non-coding upstream 447174 24689178 ~ 24689696 (-)
si:dkeyp-80c12.8 NA other downstream 677 24218594 ~ 24221446 (-)
G5624 LOC107675992,LOC107569046,LOC107729366 other downstream 50061 24032863 ~ 24172062 (-)
LOC122351900 tcf7l2,lef1,LOC107750316,LOC107757012,LOC107684275,LOC107676173,LOC107594427 other downstream 139247 24061440 ~ 24082876 (-)
LOC122350023 LOC107675992,LOC107729366,LOC107569046 other downstream 180165 24037063 ~ 24041958 (-)
LOC122351696 LOC107729347,LOC107583214,LOC107566139,LOC107746059,LOC108434669,LOC106951888,LOC108258286,LOC106586852,LOC105012299 other downstream 305675 23771024 ~ 23916448 (-)
LOC122341607 LOC107729348,LOC107676039,LOC107578077,LOC107729356,LOC107594453,LOC107676194,LOC107729349,LOC107706808 other upstream 49427 24291431 ~ 24297591 (-)
G6056 NA other upstream 626437 24868441 ~ 24870465 (-)
G6073 NA other upstream 730487 24972491 ~ 24973371 (-)
G6074 LOC107583193,LOC107757030,LOC107747412 other upstream 746772 24988776 ~ 24993345 (-)
G6078 kif16b,LOC107747412,LOC107583193 other upstream 752479 24994483 ~ 24995820 (-)

Expression


Co-expression Network