G5568


Basic Information

Item Value
gene id G5568
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 23735976 ~ 23736893 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU8017
CTgatgtacaaaaatacatttatttgaaacgaTTCCAAAATGACAGTAGTTTTCCATAGAAATATCCAAATAAAGATGTAACAATAACCATGAGTCATGCAGCTGTAGATTTTGTGCGACGGGAGATAagtattacaattatttgtTGATTTCTATCACACATAAATCGTATGGCGAGTTTCTTTTCCGCCagctttattttgctttaatgtcTATAGTGTCGTTATTGTTACAAAgtcatgatttattttacaaagaGAGTGTCAGTAGAGCGAATAAAACCTGATGGATATCATACGACTCCACCGAATGAGGGAGAGAGGGCTCATTAGCACACAATGGCATTAAATAAAGAAGGCAGAAGAACACAAATCGTTGTTAAACGTCGGCGAGTACAGTTCTGTTTCAGAAAGAGGTTCTCGCTAACCTTAGACAGCAGGTTAAAACAAGCGCTCGGCTCCCCAGACTAACCAGAACCTTCACACCGAAGGTGAAAACGCAGATTGAGCGACAAAATCGCGGCCAATCGGAGCGTTTTCTTGTTTGACATACAGCTGTGGAACTCGGTTTTTGGACCAATGAGATTTCTCTGTGCTCTCAACAATATATGTCGGCCTAAAATTGAAGATCTATGCATTTGAATTGcatgaaaatttattttcatttggagtgcacacttttaacataaattaacaTCTTAATGTGATTCATATTTGCCATAAATAGGTTTTTTGCACACactcatacattatatatatatatatttctttatttttacaatgaaTCACTTAGAGTAAGCATAAACCtgttcattttgaaaacaataacatttgtttaaaaaggcaCGCATACAGTATTTTATGAC

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8017 True 865 lncRNA 0.35 2 23735976 23736893

Neighbor

gene id symbol gene type direction distance location
neurl1aa neurl1,neurl1aa,LOC107676877,LOC107746052,LOC107746293,LOC107692176 coding downstream 532840 23152502 ~ 23203136 (-)
setd4 setd4,LOC107676883,LOC107560975,LOC107603051,LOC107746057,LOC107692116,LOC107746281,LOC107603006 coding downstream 822368 22909995 ~ 22913608 (-)
si:dkey-22n8.3 NA coding downstream 871285 22860868 ~ 22864691 (-)
pknox1.2 pknox1.2,LOC107560978,LOC107676856,LOC107603046,LOC107692119,LOC107718250,LOC107746279,LOC103022264 coding downstream 875264 22851708 ~ 22860712 (-)
pdxkb pdxk,pdxkb,LOC108428208,LOC103021965,LOC107676865,LOC108258310,LOC107718319,LOC105019670,LOC106574311 coding downstream 898568 22819346 ~ 22837408 (-)
LOC122348966 LOC107675992,LOC107569046,LOC107729366 coding upstream 295999 24032892 ~ 24038656 (-)
LOC122330280 zgc:154142,LOC107676135,LOC107594422 coding upstream 354515 24091408 ~ 24101289 (-)
LOC122351487 LOC107675992,LOC107729366,LOC107569046 coding upstream 427652 24164545 ~ 24168636 (-)
gsk3bb si:dkeyp-80c12.7,gsk3b,LOC107729358,LOC107569048,LOC107675878,LOC107684292 coding upstream 485230 24222123 ~ 24242004 (-)
zgc:175214 zgc:175214,rn122,LOC107675969,LOC107684287,LOC108434705,LOC105891037 coding upstream 531185 24268078 ~ 24274231 (-)
G5583 NA non-coding downstream 373 23733174 ~ 23735603 (-)
LOC122346633 NA non-coding downstream 22519 23708413 ~ 23713457 (-)
G5577 NA non-coding downstream 113095 23619700 ~ 23622881 (-)
LOC122342025 NA non-coding downstream 757342 22973679 ~ 22978634 (-)
G5466 NA non-coding downstream 884628 22851012 ~ 22851348 (-)
LOC122351911 NA non-coding upstream 321120 24058013 ~ 24061212 (-)
LOC122350488 NA non-coding upstream 438998 24175891 ~ 24177649 (-)
G5763 NA non-coding upstream 763500 24500393 ~ 24501238 (-)
LOC122362739 gstcd,LOC107757010,LOC107684312,LOC107729368,LOC107676029 non-coding upstream 766080 24502973 ~ 24508467 (-)
G5769 NA non-coding upstream 814690 24551583 ~ 24551880 (-)
gja5b cx41.8,LOC107746285,LOC107676875,LOC107566537,LOC107692115,LOC107746055,LOC107676898,LOC107746286,LOC107566538,LOC107692192,LOC107603053,LOC107746072 other downstream 705666 23018238 ~ 23030310 (-)
G5468 cbr1,LOC107746284,LOC107560976,LOC107692178 other downstream 819571 22913900 ~ 22916405 (-)
itsn1 itsn1,LOC107746280,LOC107718832 other downstream 832562 22864831 ~ 22903414 (-)
atp11a atp11a,LOC107676866,LOC107692133,LOC107718450,LOC107746295 other downstream 1133328 22539684 ~ 22602648 (-)
LOC122348696 sept3,LOC107718600,LOC107551931,LOC107603027,LOC107692148 other downstream 1448455 22272818 ~ 22287521 (-)
LOC122351696 LOC107729347,LOC107583214,LOC107566139,LOC107746059,LOC108434669,LOC106951888,LOC108258286,LOC106586852,LOC105012299 other upstream 34131 23771024 ~ 23916448 (-)
G5624 LOC107675992,LOC107569046,LOC107729366 other upstream 295970 24032863 ~ 24172062 (-)
LOC122350023 LOC107675992,LOC107729366,LOC107569046 other upstream 300170 24037063 ~ 24041958 (-)
LOC122351900 tcf7l2,lef1,LOC107750316,LOC107757012,LOC107684275,LOC107676173,LOC107594427 other upstream 324547 24061440 ~ 24082876 (-)
atp5md taf5,LOC107676012,LOC107583167,LOC107574147,LOC107684290 other upstream 456828 24193721 ~ 24251239 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G336575 NA non-coding CI01000119 null 622455 ~ 624046 (+)