LOC122350023 (LOC107675992,LOC107729366,LOC107569046)


Basic Information

Item Value
gene id LOC122350023
gene name LOC107675992,LOC107729366,LOC107569046
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 24037063 ~ 24041958 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246219.1
AGGAGAGGCTTCACTCCTCACACTTTCACTACAGCTCCACTAGGACTTACTGCTTTCTCTGAAAGCTCAGCAAACCATTGAAGCTTCTTACGTTTTATTACACTCGCAAATTAGTTATGGCCTTTTTACCCAGAGCCGTTCTTCTGCTGATGCTTGGAGCAGTTTGTATTCAACTGAATGCAGTCGTAGATGCTGATGGACCTGACAGGTGCTggtgtttaaaaagtttaaataaacgTGTCCCAAGAGAAGAGATTGAAGAGTTTTCCATTTTCCCCCGAAGATCAAAGTGTAACAAGGTTGAAATCATACTGACACTAAAACCTGTGAATAACTCAACCGAAGTGGTGAAGCGCTGCCTGAGTCCAGAGACAAAACAAGGAATTAATCTGCAGACTTGCTGGAACAAGAAGAACGTCAACAACACCTCCACATTTAAGACATCCAGCTGCTTCGAAAGCCATCACTGAAAGAGCAGAAGAGCAGGGGAGGACAGAAGGGGGATCTGGAAACTCTAGCAAGCCTGTGAGTGGAATGTCATCCTGTCACATGACCCGGcactgaccaatcagcatccTGGGATTTAAGTGTTGGCCTCATGCAGCTGATGGGAAATCACAGAAGACCCGAAAACACCCAGAGCACTGCCAGTAACCGCCGCACGCAGACGTTGTCGGCAAAAGCATTTGGATTAGAGTTCACTTGCTTTATGAATGAAGCACTGAATGTATCTTTACTCCAAGCAGtatttaaataactatatttaaattgttttagaatttaacttattttatgtatttttgtgtgacCAGGCCCTGTAATGTTATATATGTGATGTGACTGATTGAGTCACATTACAGTCTTTCTTTGACTTGACATTTTATATGACATGAAATACGTTTTGATGCTCTTTTTTGAGActaacaaaatgatttataaaatggAAGCTATTTCATaaagttttgtaataaaaatcagtttgaaGTTA
>XR_006251553.1
AGGAGAGGCTTCACTCCTCACACTTTCACTACAGCTCCACTAGGACTTACTGCTTTCTCTGAAAGCTCAGCAAACCATTGAAGCTTCTTACGTTTTATTACACTCGCAAATTAGTTATGGCCTTTTTACCCAGAGCCGTTCTTCTGCTGATGCTTGGAGCAGTTTGTATTCAACTGAATGCAGTCGTAGATGCTGATGGACCTGACAGGTGCTggtgtttaaaaagtttaaataaacgTGTCCCAAGAGAAGAGATTGAAGAGTTTTCCATTTTCCCCCGAAGATCAAAGTGTAACAAGGTTGAAATCATACTGACACTAAAACCTGTGAATAACTCAACCGAAGTGGTGAAGCGCTGCCTGAGTCCAGAGACAAAACAAGGAATTAATCTGCAGACTTGCTGGAACAAGAAGAACGTCAACAACACCTCCACATTTAAGACATCCAGCTGCTTCGAAAGCCATCACTGAAAGAGCAGAAGAGCAGGGGAGGACAGAAGGGGGATCTGGAAACTCTAGCAAGCCTGTGAGTGGAATGTCATCCTGTCACATGACCCGGcactgaccaatcagcatccTGGGATTTAAGTGTTGGCCTCATGCAGCTGATGGGAAATCACAGAAGACCCGAAAACACCCAGAGCACTGCCAGTAACCGCCGCACGCAGACGTTGTCGGCAAAAGCATTTGGATTAGAGTTCACTTGCTTTATGAATGAAGCACTGAATGTATCTTTACTCCAAGCAGtatttaaataactatatttaaatttatttaaataactatatttaaattgttttagaatttaacttattttatgtatttttgtgtgacCAGGCCCTGTAATGTTATATATGTGATGTGACTGATTGAGTCACATTACAGTCTTTCTTTGACTTGACATTTTATATGACATGAAATACGTTTTGATGCTCTTTTTTGAGActaacaaaatgatttataaaatggAAGCTATTTCATaaagttttgtaataaaaatcagtttgaagtta

Function

NR:

description
PREDICTED: C-X-C motif chemokine 11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246219.1 False 988 mRNA 0.40 4 24040543 24041958
XR_006251553.1 True 1012 transcript 0.40 5 24037063 24041958

Neighbor

gene id symbol gene type direction distance location
neurl1aa neurl1,neurl1aa,LOC107676877,LOC107746052,LOC107746293,LOC107692176 coding downstream 833927 23152502 ~ 23203136 (-)
setd4 setd4,LOC107676883,LOC107560975,LOC107603051,LOC107746057,LOC107692116,LOC107746281,LOC107603006 coding downstream 1123455 22909995 ~ 22913608 (-)
si:dkey-22n8.3 NA coding downstream 1172372 22860868 ~ 22864691 (-)
pknox1.2 pknox1.2,LOC107560978,LOC107676856,LOC107603046,LOC107692119,LOC107718250,LOC107746279,LOC103022264 coding downstream 1176351 22851708 ~ 22860712 (-)
pdxkb pdxk,pdxkb,LOC108428208,LOC103021965,LOC107676865,LOC108258310,LOC107718319,LOC105019670,LOC106574311 coding downstream 1199655 22819346 ~ 22837408 (-)
LOC122330280 zgc:154142,LOC107676135,LOC107594422 coding upstream 49450 24091408 ~ 24101289 (-)
LOC122351487 LOC107675992,LOC107729366,LOC107569046 coding upstream 122587 24164545 ~ 24168636 (-)
gsk3bb si:dkeyp-80c12.7,gsk3b,LOC107729358,LOC107569048,LOC107675878,LOC107684292 coding upstream 180165 24222123 ~ 24242004 (-)
zgc:175214 zgc:175214,rn122,LOC107675969,LOC107684287,LOC108434705,LOC105891037 coding upstream 226120 24268078 ~ 24274231 (-)
LOC122351310 LOC107675897,LOC107574145,LOC107684327,LOC107706793,LOC107729342,LOC107684326 coding upstream 233771 24275729 ~ 24278863 (-)
G5568 NA non-coding downstream 300170 23735976 ~ 23736893 (-)
G5583 NA non-coding downstream 301460 23733174 ~ 23735603 (-)
LOC122346633 NA non-coding downstream 323606 23708413 ~ 23713457 (-)
G5577 NA non-coding downstream 414182 23619700 ~ 23622881 (-)
LOC122342025 NA non-coding downstream 1058429 22973679 ~ 22978634 (-)
LOC122351911 NA non-coding upstream 16055 24058013 ~ 24061212 (-)
LOC122350488 NA non-coding upstream 133933 24175891 ~ 24177649 (-)
G5763 NA non-coding upstream 458435 24500393 ~ 24501238 (-)
LOC122362739 gstcd,LOC107757010,LOC107684312,LOC107729368,LOC107676029 non-coding upstream 461015 24502973 ~ 24508467 (-)
G5769 NA non-coding upstream 509625 24551583 ~ 24551880 (-)
LOC122351696 LOC107729347,LOC107583214,LOC107566139,LOC107746059,LOC108434669,LOC106951888,LOC108258286,LOC106586852,LOC105012299 other downstream 120615 23771024 ~ 23916448 (-)
gja5b cx41.8,LOC107746285,LOC107676875,LOC107566537,LOC107692115,LOC107746055,LOC107676898,LOC107746286,LOC107566538,LOC107692192,LOC107603053,LOC107746072 other downstream 1006753 23018238 ~ 23030310 (-)
G5468 cbr1,LOC107746284,LOC107560976,LOC107692178 other downstream 1120658 22913900 ~ 22916405 (-)
itsn1 itsn1,LOC107746280,LOC107718832 other downstream 1133649 22864831 ~ 22903414 (-)
atp11a atp11a,LOC107676866,LOC107692133,LOC107718450,LOC107746295 other downstream 1434415 22539684 ~ 22602648 (-)
LOC122351900 tcf7l2,lef1,LOC107750316,LOC107757012,LOC107684275,LOC107676173,LOC107594427 other upstream 19482 24061440 ~ 24082876 (-)
atp5md taf5,LOC107676012,LOC107583167,LOC107574147,LOC107684290 other upstream 151763 24193721 ~ 24251239 (-)
si:dkeyp-80c12.8 NA other upstream 176636 24218594 ~ 24221446 (-)
LOC122341607 LOC107729348,LOC107676039,LOC107578077,LOC107729356,LOC107594453,LOC107676194,LOC107729349,LOC107706808 other upstream 249473 24291431 ~ 24297591 (-)
G6056 NA other upstream 826483 24868441 ~ 24870465 (-)

Expression


Co-expression Network