rps3a (rps3a,LOC107695588)


Basic Information

Item Value
gene id rps3a
gene name rps3a,LOC107695588
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13783815 ~ 13786613 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240332.1
TTCTCGCGGTATTTCCTCATTTCCTCCTCTTTTACTCCCTGTGTTCAACATGGCAGTCGGCAAGAATAAGAGGCTGACCAAAGGTGGCAAAAAAGGTGCCAAAAAGAAGATTGTGGATCCATTCTCCAAGAAGGATTGGTATGATGTCAAGGCACCAGCCATGTTCAACATCCGCAACCTGGGCAAGACTTTGGTCACCAGGACTCAGGGAACCAGAATTGCCTCTGATGGTCTGAAGGGACGTGTGTTCGAGGTCAGTCTGGCTGATCTGCAGAACGACGAGGTGGCCTTCCGCAAGTTCAAACTGGTCACAGAAGATGTGCAGGGCAAGAACTGCCTCACCAACTTCCACGGCATGGACCTCACCCGCGACAAGATGTGCTCCATGGTCAAGAAGTGGCAGACAATGATTGAGGCCCATGTTGATGTGAAGACCACTGATGGCTATCTTCTCCGCCTGTTCTGTGTGGGCTTCACCAAGAAGCGCACCAACCAGATCAGAAAGACCTCCTACGCTCAGCACCAGCAGGTCCGTCAGATCCGCAAGAAGATGATGGAAATCATGACCCGTGAGGTCCAGACCAATGACCTCAAGGAGGTGGTCAACAAACTGATTCCTGACAGTGTAGGCAAGGACATTGAAAAGGCCTGTCAGTCCATCTACCCTCTACATGATGTCTATGTCAGGAAGGTTAAGATGCTGAAAAAGCCCAAATTTGAGCTTGGTAAGCTGATGGAGCTGCACGGAGAGGGTGGTACCACCAGTGCTACAGCTAAACCTGCAGAAGGAGACACTGGGGCCAAGGTGGAGAGAGCTGATGGATACGAGCCCCCCATCCAGGAGTCTGTGTAGAACTCCCAACACAAACAGCTGGTGTCAATAAACATGTAAATTTCA

Function

symbol description
rps3a Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytosol. Is expressed in lens. Orthologous to human RPS3A (ribosomal protein S3A).

NR:

description
40S ribosomal protein S3a

GO:

id name namespace
GO:0002181 cytoplasmic translation biological_process
GO:0009790 embryo development biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02984 RP-S3Ae, RPS3A; small subunit ribosomal protein S3Ae

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240332.1 True 898 mRNA 0.51 6 13783815 13786613

Neighbor

gene id symbol gene type direction distance location
mab21l2 mab21l2,LOC107700304 coding upstream 124705 13656854 ~ 13659110 (+)
ncapg ncapg,LOC107700299,LOC107757563 coding upstream 349595 13423032 ~ 13434220 (+)
haspin LOC107695683,LOC108416162,LOC107722281,LOC107580791 coding upstream 385089 13390102 ~ 13398726 (+)
chrna9a LOC107660492,LOC107757584,LOC107700259,LOC107548308 coding upstream 567119 13210594 ~ 13216696 (+)
n4bp2 n4bp2,LOC107700258,LOC107598270 coding upstream 582279 13190665 ~ 13201536 (+)
fhip1aa fam160a1,fam160a1a,LOC107745858,LOC107695572,LOC107700307,LOC107757618,LOC107598295 coding downstream 23080 13809693 ~ 13827382 (+)
LOC122350619 dctpp1,LOC107695562 coding downstream 56165 13842778 ~ 13843391 (+)
mnd1 mnd1,LOC107700309 coding downstream 626414 14413027 ~ 14424145 (+)
tmem131l LOC107695518,LOC107745862,LOC107757619,LOC107700308 coding downstream 638641 14425254 ~ 14459018 (+)
LOC122346953 pcdh8 coding downstream 704171 14490784 ~ 14498314 (+)
G3125 NA non-coding upstream 185701 13597901 ~ 13598114 (+)
LOC122351052 NA non-coding upstream 399595 13380568 ~ 13384220 (+)
LOC122351590 NA non-coding upstream 410580 13370178 ~ 13373235 (+)
LOC122335725 NA non-coding upstream 415786 13364102 ~ 13368029 (+)
LOC122351401 NA non-coding upstream 421088 13359702 ~ 13362727 (+)
LOC122345860 sh3d19,LOC107745872,LOC107695906,LOC107598296,LOC107700261 non-coding downstream 821 13787434 ~ 13792840 (+)
G3165 gatb,LOC107695556 non-coding downstream 41446 13828059 ~ 13882395 (+)
G3245 fbxw7,LOC107757568,LOC107745860 non-coding downstream 482299 14268912 ~ 14273785 (+)
G3262 NA non-coding downstream 615793 14402406 ~ 14406003 (+)
G3282 NA non-coding downstream 694817 14481430 ~ 14481806 (+)
slit2 slit2,LOC107700301,LOC107695646 other upstream 197834 13516208 ~ 13585981 (+)
rhoh rhoh,LOC107548321,LOC107598269,LOC107757583 other upstream 578099 13203059 ~ 13205716 (+)
dnah6 dnah6,LOC106610484 other upstream 1059357 12659262 ~ 12724458 (+)
kdm4c kdm4c,LOC107702398,LOC107548355,LOC107570226,LOC107655842,LOC107750465,LOC107709452 other upstream 1125308 12644679 ~ 12658507 (+)
LOC122350793 zbtb5,LOC107656143,LOC107702373,LOC107591545 other upstream 1939755 11837606 ~ 11844060 (+)
G3187 gatb,LOC107695556,LOC107695902 other downstream 327818 14114431 ~ 14118433 (+)
LOC122345399 NA other downstream 693585 14480198 ~ 14481346 (+)
lrata lrat,lrata,LOC107572197,LOC107714634,LOC107695864,LOC107700276,LOC107757590 other downstream 815699 14602312 ~ 14603888 (+)
npy2r npy2r,LOC107572195,LOC107714623,LOC107695741,LOC107757570,LOC107700264 other downstream 823631 14610244 ~ 14612677 (+)
G3380 LOC107572695,LOC107695836 other downstream 936932 14723545 ~ 14791788 (+)

Expression


Co-expression Network