XLOC_006584 (pbld)


Basic Information

Item Value
gene id XLOC_006584
gene name pbld
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22839821 ~ 22843805 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012720
AAACACGGCTCTAAAACATAACTAAAAGGTATACTAGAATAGAGCTGGAGAGCTGTAACAAATGGAGATTCCAATCTTTACTGTTGATGCCTTTACTAAAGTGCCTTTCAAAGGCAATCCTGCTGCAGTTTGTCTCATAGAAAATGAGCTGCAAGATGATCTTTATCAGAGCATTGCTGCTGAGATGAATTTATCAGAGACTGCTTTCGTCATAAAAGGCAATTCAATGGATTTTTCCACAGGTTCAAGGTTTGGATTACGCTGGTTTACCCCCAAAAGTGAGATTGCACTATGTGGACATGCAACACTGGCCTCTGCCGCAGTGCTCTTTTACCTTAAAAAAAACATCAACCCTTTTGTGGTGTTTGAGACCATGAGTGGGGATCTTTATGTGCGTCAACATGAAGACTCATTAATAATGGACTTCCCTTTAAACACACCACAGCCCCAGGACCATAGTGAATTCAGGGATTTATTAAAGGCTGTTGTAGGAGATTTACCCACTGAGGATGTTTGCTACAGTCCAAGCACAAAGAAACTAATGATTCGTCTGGCTGACACATGCGACAGATCTGATCTTGTGTCTCTGAGGCCAGAGGCAGATTCTCTTCTGAGATCAGAGGCCACTGGCAAGATAAAAAGTGTTGTTGTAACACTGAAAGGGGCTCAGAAAGCTCAGCCTGGATATGACTTCTACTCCCGCAACTTTGCGCCCTGGGTTGGAATCCCTGAAGATCCAGTCACTGGGTCTGCACATACAGTTCTTGCTGGCTACTGGTCCGAGAAgctgaagaaaaagaaaatgttggctTACCAGTGCTCCAGTCGAGGAGGTGAACTGAAGCTGGAGATAAGAGATGACGGCCGACTAGACATCACTGGTGAAGCGCAGATCATTCTTCAGGGAACTCTTAAAATCTAGACAAATCTTAAACGACTGATTGATTAAATTTGAGGAGACGCTTTCAGTGAAATCTGCTGCATTTAATCTTCACTCTACATTAACACACTCTAGGTTATGTGAcatttaataaaatctaaatttattaaata
>TCONS_00012721
ttttaaaaagtacaggtctgagtgagtaaattatttattatttttacagtaaatctgttatgctgaatgatgatggaacattatattttacatatttaaattaggaaATGTTATTTAAAGTGTTAAAGTACACACTGTAATTTAACAAGCATTCTATTTTAAGAGCAAGacgacattttaaaatgtaaggtCTGTACCTTTAACATGACCCGTATCTTTAAGGTCAAAGTCTAACTTGATTTCAAACACGGCTCTAAAACATAACTAAAAGGTATACTAGAATAGAGCTGGAGAGCTGTAACAAATGGAGATTCCAATCTTTACTGTTGATGCCTTTACTAAAGTGCCTTTCAAAGGCAATCCTGCTGCAGTTTGTCTCATAGAAAATGTAAGTATCACCACAAGAAAGTTTTCTGTTATCAgattagtttttaataaaatgtcaacTAAAAGTGTAATGCTATTAACACTGCTTGTGTAAATTCTCTTACATGCTTGTCTGTAATGTATTCAGGAGCTGCAAGATGATCTTTATCAGAGCATTGCTGCTGAGATGAATTTATCAGAGACTGCTTTCGTCATAAAAGGCAATTCAATGGATTTTTCCACAGGTTCAAGGTTTGGATTACGCTGGTTTACCCCCAAAAGTGAGATTGCACTATGTGGACATGCAACACTGGCCTCTGCCGCAGTGCTCTTTTACCTTAAAAAAAACATCAACCCTTTTGTGGTGTTTGAGACCATGAGTGGGGATCTTTATGTGCGTCAACATGAAGACTCATTAATAATGGACTTCCCTTTAAACACACCACAGCCCCAGGACCATAGTGAATTCAGGGATTTATTAAAGGCTGTTGTAGGAGATTTACCCACTGAGGATGTTTGCTACAGTCCAAGCACAAAGAAACTAATGATTCGTCTGGCTGACACATGCGACAGATCTGATCTTGTGTCTCTGAGGCCAGAGGCAGATTCTCTTCTGAGATCAGAGGCCACTGGCAAGATAAAAAGTGTTGTTGTAACACTGAAAGGGGCTCAGAAAGCTCAGCCTGGATATGACTTCTACTCCCGCAACTTTGCGCCCTGGGTTGGAATCCCTGAAGATCCAGTCACTGGGTCTGCACATACAGTTCTTGCTGGCTACTGGTCCGAGAAgctgaagaaaaagaaaatgttggctTACCAGTGCTCCAGTCGAGGAGGTGAACTGAAGCTGGAGATAAGAGATGACGGCCGACTAGACATCACTGGTGAAGCGCAGATCATTCTTCAGGGAACTCTTAAAATCTAGACAAATCTTAAACGACTGATTGATTAAATTTGAGGAGACGCTTTCAGTGAAATCTGCTGCATTTAATCTTCACTCTACATTAACACACTCTAGGTTATGTGAcatttaataaaatctaaatttattaaata

Function

symbol description
pbld Predicted to enable isomerase activity. Predicted to act upstream of or within biosynthetic process. Predicted to be active in cytoplasm. Orthologous to human PBLD (phenazine biosynthesis like protein domain containing).

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0005575 cellular_component cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016853 isomerase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-217 Predicted to enable isomerase activity. Predicted to act upstream of or within biosynthetic process. Predicted to be active in cytoplasm. Orthologous to human PBLD (phenazine biosynthesis like protein domain containing).

Ensembl:

ensembl_id ENSDARG00000016704

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012720 False 1053 mRNA 0.42 9 22839821 22843562
TCONS_00012721 True 1422 nonsense_mediated_decay 0.38 8 22839821 22843805

Neighbor

gene id symbol gene type direction distance location
XLOC_006583 si:ch211-1n9.6 coding downstream 20154 22819485 ~ 22819667 (-)
XLOC_006582 CR550304.1 coding downstream 55388 22778060 ~ 22784433 (-)
XLOC_006581 psda coding downstream 65330 22740038 ~ 22774491 (-)
XLOC_006580 glud1a coding downstream 140797 22679084 ~ 22699024 (-)
XLOC_006579 mmrn2a coding downstream 193687 22619684 ~ 22646134 (-)
XLOC_006585 BX530068.1 coding upstream 25 22843830 ~ 22847484 (-)
XLOC_006586 pbld2 coding upstream 5991 22849796 ~ 22862133 (-)
XLOC_006587 rufy2 coding upstream 32662 22876467 ~ 22907260 (-)
XLOC_006588 tspan15 coding upstream 80219 22924024 ~ 22961610 (-)
XLOC_006589 hk1 coding upstream 129083 22972888 ~ 23007813 (-)
XLOC_006471 BX537274.2 misc downstream 12574916 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 22013596 825904 ~ 826225 (-)
XLOC_006578 BX649385.1 non-coding downstream 644653 22191361 ~ 22195168 (-)
XLOC_006577 NA non-coding downstream 899856 21925701 ~ 21939965 (-)
XLOC_006570 NA non-coding downstream 1692439 21146114 ~ 21147382 (-)
XLOC_006569 NA non-coding downstream 1760410 21076652 ~ 21079411 (-)
XLOC_006595 NA non-coding upstream 368954 23212759 ~ 23217818 (-)
XLOC_006597 NA non-coding upstream 564224 23408029 ~ 23411631 (-)
XLOC_006602 AL772289.1 non-coding upstream 1117487 23961292 ~ 23961406 (-)
XLOC_006605 CR762497.2 non-coding upstream 1283258 24127063 ~ 24127179 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location