RNA id: TCONS_00012721


Basic Information

Item Value
RNA id TCONS_00012721
length 1422
RNA type nonsense_mediated_decay
GC content 0.38
exon number 8
gene id XLOC_006584
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22839821 ~ 22843805 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttaaaaagtacaggtctgagtgagtaaattatttattatttttacagtaaatctgttatgctgaatgatgatggaacattatattttacatatttaaattaggaaATGTTATTTAAAGTGTTAAAGTACACACTGTAATTTAACAAGCATTCTATTTTAAGAGCAAGacgacattttaaaatgtaaggtCTGTACCTTTAACATGACCCGTATCTTTAAGGTCAAAGTCTAACTTGATTTCAAACACGGCTCTAAAACATAACTAAAAGGTATACTAGAATAGAGCTGGAGAGCTGTAACAAATGGAGATTCCAATCTTTACTGTTGATGCCTTTACTAAAGTGCCTTTCAAAGGCAATCCTGCTGCAGTTTGTCTCATAGAAAATGTAAGTATCACCACAAGAAAGTTTTCTGTTATCAgattagtttttaataaaatgtcaacTAAAAGTGTAATGCTATTAACACTGCTTGTGTAAATTCTCTTACATGCTTGTCTGTAATGTATTCAGGAGCTGCAAGATGATCTTTATCAGAGCATTGCTGCTGAGATGAATTTATCAGAGACTGCTTTCGTCATAAAAGGCAATTCAATGGATTTTTCCACAGGTTCAAGGTTTGGATTACGCTGGTTTACCCCCAAAAGTGAGATTGCACTATGTGGACATGCAACACTGGCCTCTGCCGCAGTGCTCTTTTACCTTAAAAAAAACATCAACCCTTTTGTGGTGTTTGAGACCATGAGTGGGGATCTTTATGTGCGTCAACATGAAGACTCATTAATAATGGACTTCCCTTTAAACACACCACAGCCCCAGGACCATAGTGAATTCAGGGATTTATTAAAGGCTGTTGTAGGAGATTTACCCACTGAGGATGTTTGCTACAGTCCAAGCACAAAGAAACTAATGATTCGTCTGGCTGACACATGCGACAGATCTGATCTTGTGTCTCTGAGGCCAGAGGCAGATTCTCTTCTGAGATCAGAGGCCACTGGCAAGATAAAAAGTGTTGTTGTAACACTGAAAGGGGCTCAGAAAGCTCAGCCTGGATATGACTTCTACTCCCGCAACTTTGCGCCCTGGGTTGGAATCCCTGAAGATCCAGTCACTGGGTCTGCACATACAGTTCTTGCTGGCTACTGGTCCGAGAAgctgaagaaaaagaaaatgttggctTACCAGTGCTCCAGTCGAGGAGGTGAACTGAAGCTGGAGATAAGAGATGACGGCCGACTAGACATCACTGGTGAAGCGCAGATCATTCTTCAGGGAACTCTTAAAATCTAGACAAATCTTAAACGACTGATTGATTAAATTTGAGGAGACGCTTTCAGTGAAATCTGCTGCATTTAATCTTCACTCTACATTAACACACTCTAGGTTATGTGAcatttaataaaatctaaatttattaaata

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0005575 cellular_component cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016853 isomerase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-217 Predicted to enable isomerase activity. Predicted to act upstream of or within biosynthetic process. Predicted to be active in cytoplasm. Orthologous to human PBLD (phenazine biosynthesis like protein domain containing).

Ensembl:

ensembl_id ENSDART00000138196

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012718 lncRNA downstream 55388 22778060 ~ 22784433 (-) True XLOC_006582
TCONS_00012713 lncRNA downstream 193687 22631217 ~ 22646134 (-) True XLOC_006579
TCONS_00012711 lncRNA downstream 644653 22191361 ~ 22195168 (-) True XLOC_006578
TCONS_00013480 lncRNA downstream 899856 21925701 ~ 21939965 (-) True XLOC_006577
TCONS_00012707 lncRNA downstream 1169861 21668349 ~ 21669960 (-) True XLOC_006573
TCONS_00013779 lncRNA upstream 25 22843830 ~ 22847484 (-) False XLOC_006585
TCONS_00012733 lncRNA upstream 207185 23050990 ~ 23051724 (-) True XLOC_006591
TCONS_00012735 lncRNA upstream 215712 23059517 ~ 23062293 (-) False XLOC_006592
TCONS_00013780 lncRNA upstream 215712 23059517 ~ 23062531 (-) False XLOC_006592
TCONS_00012736 lncRNA upstream 217419 23061224 ~ 23062531 (-) True XLOC_006592
TCONS_00012719 mRNA downstream 20154 22819485 ~ 22819667 (-) True XLOC_006583
TCONS_00012717 mRNA downstream 65330 22740038 ~ 22774491 (-) True XLOC_006581
TCONS_00012716 mRNA downstream 68113 22740038 ~ 22771708 (-) False XLOC_006581
TCONS_00012715 mRNA downstream 73376 22740038 ~ 22766445 (-) False XLOC_006581
TCONS_00012714 mRNA downstream 140797 22679084 ~ 22699024 (-) True XLOC_006580
TCONS_00012724 mRNA upstream 5991 22849796 ~ 22862133 (-) False XLOC_006586
TCONS_00012726 mRNA upstream 32662 22876467 ~ 22903246 (-) False XLOC_006587
TCONS_00012727 mRNA upstream 32662 22876467 ~ 22907260 (-) True XLOC_006587
TCONS_00012728 mRNA upstream 80219 22924024 ~ 22961610 (-) False XLOC_006588
TCONS_00012729 mRNA upstream 87433 22931238 ~ 22961605 (-) True XLOC_006588
TCONS_00012703 other downstream 2292323 20546967 ~ 20547498 (-) True XLOC_006567
TCONS_00012701 other downstream 2299120 20535650 ~ 20540701 (-) False XLOC_006566
TCONS_00012696 other downstream 2608071 20230139 ~ 20231750 (-) True XLOC_006563
TCONS_00012695 other downstream 2608113 20227045 ~ 20231708 (-) False XLOC_006563
TCONS_00012694 other downstream 2617687 20220541 ~ 20222134 (-) True XLOC_006562
TCONS_00012722 other upstream 25 22843830 ~ 22844682 (-) False XLOC_006585
TCONS_00012723 other upstream 76 22843881 ~ 22847484 (-) True XLOC_006585
TCONS_00012725 other upstream 12530 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012744 other upstream 644492 23488297 ~ 23513803 (-) False XLOC_006598
TCONS_00012752 other upstream 1117487 23961292 ~ 23961406 (-) True XLOC_006602

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_13527966_13529695.mRNA False 1335 mRNA 0.28 5 CI01000012 13527184 ~ 13529762 (+)