Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00012707 |
| length | 759 |
| lncRNA type | retained_intron |
| GC content | 0.43 |
| exon number | 2 |
| gene id | XLOC_006573 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 21666521 ~ 21672131 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006629 | lipid metabolic process | biological_process |
| GO:0006631 | fatty acid metabolic process | biological_process |
| GO:0006633 | fatty acid biosynthetic process | biological_process |
| GO:0006636 | unsaturated fatty acid biosynthetic process | biological_process |
| GO:0030148 | sphingolipid biosynthetic process | biological_process |
| GO:0042761 | very long-chain fatty acid biosynthetic process | biological_process |
| GO:0035338 | long-chain fatty-acyl-CoA biosynthetic process | biological_process |
| GO:0019367 | fatty acid elongation, saturated fatty acid | biological_process |
| GO:0034625 | fatty acid elongation, monounsaturated fatty acid | biological_process |
| GO:0034626 | fatty acid elongation, polyunsaturated fatty acid | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0030176 | integral component of endoplasmic reticulum membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0102756 | very-long-chain 3-ketoacyl-CoA synthase activity | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0009922 | fatty acid elongase activity | molecular_function |
| GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity | molecular_function |
| GO:0102337 | 3-oxo-cerotoyl-CoA synthase activity | molecular_function |
| GO:0102338 | 3-oxo-lignoceronyl-CoA synthase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-031110-3 | Predicted to enable fatty acid elongase activity. Predicted to be involved in fatty acid biosynthetic process and sphingolipid biosynthetic process. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in EVL. |
| ensembl_id | ENSDART00000143032 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00013778 | lncRNA | downstream | 520967 | 21146114 ~ 21147382 (-) | True | XLOC_006570 |
| TCONS_00013777 | lncRNA | downstream | 588938 | 21076652 ~ 21079411 (-) | True | XLOC_006569 |
| TCONS_00013776 | lncRNA | downstream | 936461 | 20730955 ~ 20731888 (-) | True | XLOC_006568 |
| TCONS_00013479 | lncRNA | downstream | 937166 | 20729834 ~ 20731183 (-) | False | XLOC_006568 |
| TCONS_00012702 | lncRNA | downstream | 1127680 | 20539513 ~ 20540669 (-) | True | XLOC_006566 |
| TCONS_00013480 | lncRNA | upstream | 255741 | 21925701 ~ 21939965 (-) | True | XLOC_006577 |
| TCONS_00012711 | lncRNA | upstream | 521401 | 22191361 ~ 22195168 (-) | True | XLOC_006578 |
| TCONS_00012713 | lncRNA | upstream | 961257 | 22631217 ~ 22646134 (-) | True | XLOC_006579 |
| TCONS_00012718 | lncRNA | upstream | 1108100 | 22778060 ~ 22784433 (-) | True | XLOC_006582 |
| TCONS_00013779 | lncRNA | upstream | 1173870 | 22843830 ~ 22847484 (-) | False | XLOC_006585 |
| TCONS_00012705 | mRNA | downstream | 8146 | 21656713 ~ 21660203 (-) | True | XLOC_006572 |
| TCONS_00012704 | mRNA | downstream | 17945 | 21638454 ~ 21650404 (-) | True | XLOC_006571 |
| TCONS_00012700 | mRNA | downstream | 1127559 | 20535159 ~ 20540790 (-) | False | XLOC_006566 |
| TCONS_00012699 | mRNA | downstream | 1149348 | 20515692 ~ 20519001 (-) | True | XLOC_006565 |
| TCONS_00012698 | mRNA | downstream | 1149717 | 20392656 ~ 20518632 (-) | False | XLOC_006565 |
| TCONS_00012708 | mRNA | upstream | 12810 | 21682770 ~ 21688176 (-) | True | XLOC_006574 |
| TCONS_00012709 | mRNA | upstream | 19307 | 21689267 ~ 21701323 (-) | True | XLOC_006575 |
| TCONS_00012710 | mRNA | upstream | 42324 | 21712284 ~ 21739142 (-) | True | XLOC_006576 |
| TCONS_00012712 | mRNA | upstream | 949724 | 22619684 ~ 22646134 (-) | False | XLOC_006579 |
| TCONS_00012714 | mRNA | upstream | 1009124 | 22679084 ~ 22699024 (-) | True | XLOC_006580 |
| TCONS_00012703 | other | downstream | 1120851 | 20546967 ~ 20547498 (-) | True | XLOC_006567 |
| TCONS_00012701 | other | downstream | 1127648 | 20535650 ~ 20540701 (-) | False | XLOC_006566 |
| TCONS_00012696 | other | downstream | 1436599 | 20230139 ~ 20231750 (-) | True | XLOC_006563 |
| TCONS_00012695 | other | downstream | 1436641 | 20227045 ~ 20231708 (-) | False | XLOC_006563 |
| TCONS_00012694 | other | downstream | 1446215 | 20220541 ~ 20222134 (-) | True | XLOC_006562 |
| TCONS_00012721 | other | upstream | 1169861 | 22839821 ~ 22843805 (-) | True | XLOC_006584 |
| TCONS_00012722 | other | upstream | 1173870 | 22843830 ~ 22844682 (-) | False | XLOC_006585 |
| TCONS_00012723 | other | upstream | 1173921 | 22843881 ~ 22847484 (-) | True | XLOC_006585 |
| TCONS_00012725 | other | upstream | 1186375 | 22856335 ~ 22858455 (-) | True | XLOC_006586 |
| TCONS_00012744 | other | upstream | 1818337 | 23488297 ~ 23513803 (-) | False | XLOC_006598 |
