pspc1 (pspc1)


Basic Information

Item Value
gene id pspc1
gene name pspc1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 15527154 ~ 15581541 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246182.1
TGCGGAGGCTGGAGTCTTCTTTTATGGTATTGCACAAGCGCGCTTGATTGTAGGTTGCCATAATAGTAGATAGatcataatacaaaatattatttaatctatAATCAGCTAATAGCGCTGATTTATTAACCAGAGTTAAGGCTGTAGAGCAATGGCTAACCGAAACCTAAAACTGGCGAACATTCAAAACAGCGCTACATCCCCGCACACACAGAACGTAAAGCGCAGCACGGAATCTCCAGGAGATCCCAGTGAAAAGATGGAGCCATCCTCTCCATCACCACGGGACCCCAGTCCTGCAAACACTGAGCCTCAAGAGATGACTCTAAACCTCACGAACTTTAGAAGACCGGGGGAGAAAACATTCACTCAGCGATGCCGACTGGTTGTTGGTAATCTCCCATCAGATATGACGGAAGAAGATTTCAAGAAGCTGTTCTCCAAATACGGGGAAGCAAACGAGGTGTTGATCAATCTAGACAGAGGATTCGGCTTTATACGCCTGGAAACAAGGACACTTGCAGAGATCGCTAAGGCTGAGTTAGACGGCACAATGCTGGGGAACAGACCGATTCAAATTCGCTTTGCCACACACGGGGCTGCACTGACAGTACGAAACCTGTCTCCAGTGGTGTCAAATGAGCTGCTGGAGCAGGCCTTCTCACAATTTGTGGTGGTTGATGACCGAGGCCGACCCACAGGGAaggaaattgTGGAGTTTGCCAGTAAGCCTGCTGCCAGGAAAGCCTAAAGTGGCCTGGACCGCTATTGAGCATCTATGGAAGGAGCATGCAGTCTGAGcAGGTCCCCTCGTCCAGTCATTATTGAGCCAACAGAACAGATTGATGATGAAGATGGGATGCCAGAAAAGCAGTTGCAAAAATCAGCGCAATATCACAAAGAAAGGGAATATCAACCACGCTTTGCACAGCCAGGAACCTTTGAATTTGAGTACTCATCTCGCTGGAAGGCTTTGGATGAGATGGAGAAACAGCAGAGGGAACAAGTCGAACGGAACATACAAGAAGCAAAGGAGAAATTGGAGGCTGAAATGGAGGCTGCCAAACATGAGCATCAACTCATGATGATGAGACAAGATCTAATGAGACGTCAAGAGGAACTGCGTCGCTTGGAGGAACTCAGGAATCAGGAGCTGCATAAACGCAAGCAGATTGAAATGAGGCATGAAGAAGAGAGACGTAGGCGTGAGGAGGATATGATGCGCCATAGAGAACAGCTTGACATGAGACGGCAACCAGATGGATTCAAGCCCAGTTTCATGGAGAATAGAGAACAGGATACGAGAATGAATGAAAGGGGGACCCATGGAACTATTAATATGGGAGATTCATTTAACCCTGTCGCTGTGGTTAGTGGTAACCCCTCACAAATGGGCATAGCAGGCCACATTGGAGCCATGGGGCCAGATGCATCATCGAATATGGGAACTTCCCTGATTCCGGATAATGGAGTTATGcACAATGATCGATTTTCTGAAGGTGGACCTCTTCAAATGGGTTCCCCAGTAAGTGGGCAGCCTGGTGTTGAATCTCCTCAACAACAGCAGCACTCACCGATGATGGCTGGGGCAGGTCCTGTTCCTGGTGTAGTTGGCCAAAGTGGTTTTGTGAGAGGAAGTCCAGTTGGGGGACACTTTGATGGGCCTAACAACAAGCGACATAGATACTGACATTTCTTTTCCCTAGTAATTGTGCTTACGTATGTTCAGATTGAACCACCTTGACTCATTACTGATGTATAACCATATATTCTTTTTCCCATCGCCTTTTTCTGAAAAACCATTTGTCTAAAATGGGTAGAAATGGCATGAGTCTGGTCCTGTGTTAATGTGAAACATTGTCATAAATGATTAATGCCATTGAATCAGCTTGTACTTGACAAAATGTCCTAAGGCAGTTGTAGATTGCTTGCAACTACTGTATTTgtttatcttattttaatatctgaCATTAagccatgattttatttttttaattttttttagaatatttagaggtttttgttttagaatatCAGTCcttgaataaaatgtttcaaaaaaca

Function

symbol description
pspc1 Predicted to enable RNA binding activity. Predicted to be involved in regulation of circadian rhythm and regulation of transcription, DNA-templated. Predicted to act upstream of or within rhythmic process. Predicted to be located in cytoplasm and nuclear lumen. Predicted to be active in nucleus. Orthologous to human PSPC1 (paraspeckle component 1).

NR:

description
PREDICTED: paraspeckle component 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0016363 nuclear matrix cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K24993 PSPC1; paraspeckle component 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246182.1 True 2064 mRNA 0.45 11 15527154 15581541

Neighbor

gene id symbol gene type direction distance location
cntln cntln,LOC107595061 coding downstream 348708 15097021 ~ 15178446 (-)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329,LOC107695241,LOC107598242 coding downstream 447744 15063437 ~ 15079410 (-)
foxe1 foxe1,LOC107598243,LOC107757598,LOC107700287 coding downstream 474278 15050819 ~ 15052876 (-)
trmo trmo,LOC107580156 coding downstream 489463 15033169 ~ 15037691 (-)
anp32b anp32b,LOC107595056 coding downstream 497796 15024645 ~ 15029358 (-)
dnajb14 dnajb14 coding upstream 4038 15585579 ~ 15626410 (-)
sugt1 sugt1,sgut1 coding upstream 50524 15632065 ~ 15650309 (-)
snapc3 snapc3 coding upstream 119568 15701109 ~ 15709846 (-)
spp2 spp2,LOC107654271,LOC107707843,LOC107588827,LOC107719734,LOC107556720 coding upstream 485186 16066727 ~ 16069295 (-)
c1h3orf70 si:dkey-22o12.2,LOC107588819,LOC107732704,LOC107704345,LOC107699091,LOC107719729,LOC107556711,LOC108435969 coding upstream 727468 16309009 ~ 16321592 (-)
G3602 NA non-coding downstream 8582 15518183 ~ 15518572 (-)
G3588 NA non-coding downstream 177568 15349375 ~ 15349586 (-)
G3587 NA non-coding downstream 180463 15346350 ~ 15346691 (-)
G3583 bnc2,LOC107737409,LOC107595060,LOC107678088,LOC107598241,LOC107700330 non-coding downstream 209531 15313446 ~ 15317623 (-)
G3582 NA non-coding downstream 215984 15310904 ~ 15311170 (-)
G3652 NA non-coding upstream 8331 15589872 ~ 15590879 (-)
G3653 NA non-coding upstream 14273 15595814 ~ 15596165 (-)
G3659 NA non-coding upstream 72397 15653938 ~ 15654151 (-)
G3677 LOC106572279,LOC106561082 non-coding upstream 113257 15694798 ~ 15695916 (-)
G3678 NA non-coding upstream 115044 15696585 ~ 15698305 (-)
G3571 NA other downstream 296268 15230539 ~ 15230886 (-)
G3515 coro2a other downstream 497534 15020642 ~ 15029620 (-)
G3522 NA other downstream 601791 14925085 ~ 14925363 (-)
cxxc4 cxxc4,LOC107695705 other downstream 608368 14898201 ~ 14918786 (-)
G3491 gpank1 other downstream 778179 14746829 ~ 14748975 (-)
alg11 alg11,LOC107556718,LOC107588826,LOC107705036 other upstream 487636 16069177 ~ 16073920 (-)
march4l zgc:153256,march9,LOC107719730,LOC107654275,LOC107556712,LOC107707834,LOC107699089 other upstream 578151 16159692 ~ 16198263 (-)
igf2bp2b igf2bp2b,LOC107704342,LOC107573191,LOC107699092,LOC107556709 other upstream 752661 16334202 ~ 16359025 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 865547 16447088 ~ 16448519 (-)
LOC122330431 lsm6 other upstream 1853176 17434717 ~ 17436707 (-)

Expression


Co-expression Network