G3677 (LOC106572279,LOC106561082)


Basic Information

Item Value
gene id G3677
gene name LOC106572279,LOC106561082
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 15694798 ~ 15695916 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU5261
GCACAATGCCCTTCTCCGCCGTCTTGGATGCAGGTTCCTCCTCCCAGCCTTTCCTTAGCAAGTCCAGGGGTCCTTTAACCTGCCATCCATAGAGAAGCTCAAATGGTGAGAATCCTGTTGATGCTTGGGGTACCTCTTGGTAAGCAAAGAGAACAAATTGTAGCCACTTGTCCCAGTCTTTTCCTGTGTCTGCAACAAACTTCCGTAGCATGTTCTTGAGAGTTTGGTTAAATCGCTCCACCAGGCCATCCGTCTGAGGGTGGTAGGGAGTTGATCGGATGGCTGTAATGCCCAACTGCTTGTTCAGCTGCCCCATCAACCGTGATGTAAAGTTCGTTCCCTGGTCTGTGAGTATCTCCTCGGGTATGCCAACTCTGGAGAAAAGTTGAACCAGGGCATGGAAGATCTTAGGATACCTTGTGGCGTAGTCTCTCACTACCAGGATGTAGCGATGTCCAGCACTGCTCTTTTCCATTGGCCCCATAATTTCCATGGCGATTTGCCTAAAAGGTGCAGAGATGACAGGGAGAGGTTGCAGAGGTGCTCTTCCCCCGCTGGGACACAGCACTTGTCTTTTGGCAGATGGCAGATGGTGTTTGTATATCTGTGTATAGTGTGGGCCAGTAAAAGCGTGAGCTAATGTGTGCATATGTTTTCTGTTGGCGAAGGTGACCTGCCCATGGAACAGTGTGTGCAAAATGCAGAACAAGAGGACAACAACAAGATGGTACTATCAAACGGGTCATATCATTATTTCGCACATATAACACAGAATTCAATAGTCCTTGCTGGTGGGTTGCAAGAGTTCATACAGCACTGGTATGTCTCTACCAAGAATCATATCAGCCGGTAAATTGTCGACTATGGCAACATTAAGTAAGTACATTTGTTCCTGTACCTCTACCGTTACCTCAGCTTCACATCACAGTGTCTAAGAGTGCTTTCAGTTCATGTCCATTAACAGTCACAGCTAAGACATTCTGACTCTCCCCCTTAGAGCCAAAATCACAGTCCCCCTCTCTGGGCACATAACAAAACCCAGTAAGTTTTGCTTTGTGAGCAGGACACACAGCTGCTTTGTGGCCCGGCTGCTGGCAGTAAAAGCAAAGCAAGTCTTTG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106572279

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5261 True 1119 lncRNA 0.48 1 15694798 15695916

Neighbor

gene id symbol gene type direction distance location
sugt1 sugt1,sgut1 coding downstream 44489 15632065 ~ 15650309 (-)
dnajb14 dnajb14 coding downstream 68388 15585579 ~ 15626410 (-)
pspc1 pspc1 coding downstream 113257 15527154 ~ 15581541 (-)
cntln cntln,LOC107595061 coding downstream 516352 15097021 ~ 15178446 (-)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329,LOC107695241,LOC107598242 coding downstream 615388 15063437 ~ 15079410 (-)
snapc3 snapc3 coding upstream 5193 15701109 ~ 15709846 (-)
spp2 spp2,LOC107654271,LOC107707843,LOC107588827,LOC107719734,LOC107556720 coding upstream 370811 16066727 ~ 16069295 (-)
c1h3orf70 si:dkey-22o12.2,LOC107588819,LOC107732704,LOC107704345,LOC107699091,LOC107719729,LOC107556711,LOC108435969 coding upstream 613093 16309009 ~ 16321592 (-)
ubac2 ubac2,LOC107704341,LOC107732706,LOC107573193 coding upstream 675572 16371488 ~ 16387107 (-)
dachc dachc,dach1,LOC107732708,LOC107602747,LOC107719724,LOC107699095,LOC108435962 coding upstream 697621 16393537 ~ 16435858 (-)
G3659 NA non-coding downstream 40647 15653938 ~ 15654151 (-)
G3653 NA non-coding downstream 98633 15595814 ~ 15596165 (-)
G3652 NA non-coding downstream 103919 15589872 ~ 15590879 (-)
G3602 NA non-coding downstream 176226 15518183 ~ 15518572 (-)
G3588 NA non-coding downstream 345212 15349375 ~ 15349586 (-)
G3678 NA non-coding upstream 669 15696585 ~ 15698305 (-)
G3679 NA non-coding upstream 2571 15698487 ~ 15699011 (-)
G3681 NA non-coding upstream 3794 15699710 ~ 15699962 (-)
G3697 NA non-coding upstream 146439 15842355 ~ 15842810 (-)
G3735 NA non-coding upstream 320846 16016762 ~ 16017159 (-)
G3571 NA other downstream 463912 15230539 ~ 15230886 (-)
G3515 coro2a other downstream 665178 15020642 ~ 15029620 (-)
G3522 NA other downstream 769435 14925085 ~ 14925363 (-)
cxxc4 cxxc4,LOC107695705 other downstream 776012 14898201 ~ 14918786 (-)
G3491 gpank1 other downstream 945823 14746829 ~ 14748975 (-)
alg11 alg11,LOC107556718,LOC107588826,LOC107705036 other upstream 373261 16069177 ~ 16073920 (-)
march4l zgc:153256,march9,LOC107719730,LOC107654275,LOC107556712,LOC107707834,LOC107699089 other upstream 463776 16159692 ~ 16198263 (-)
igf2bp2b igf2bp2b,LOC107704342,LOC107573191,LOC107699092,LOC107556709 other upstream 638286 16334202 ~ 16359025 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 751172 16447088 ~ 16448519 (-)
LOC122330431 lsm6 other upstream 1738801 17434717 ~ 17436707 (-)

Expression


Co-expression Network