CI01000000_10828551_10844940 (SLC9A6, SLC9A6A)


Basic Information

Item Value
gene id CI01000000_10828551_10844940
gene name SLC9A6, SLC9A6A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 10828346 ~ 10845347 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_10828551_10844940.mRNA
GAATAAAAGGAAACGACCCTTATGCGCAGCGTTTTCCCAATTTGAACTGCACGAACACATTGTTGGGTTTTCACGTGACGTCACATGCAGTGGGCGGGACGTCACTGGGAATCAGGAACAATCTACATGATTGTATTTGCTAATGCTCCTGCCTTAGGTTATAGTGCATTCATCTTATATCTTTCCACCTAAAAGAAATGCCAACATGGGCTCCACATGTGAAATGAACGCCGCGGTGAGTGTTTGGAGAAGACTGCCTCTGTTTGTTTTGGCGAGCTCCCTCTGCTTGTGCCTGAGCAGAGCTGAAGACAGTGCGATGGAGAACATCGTGACAGAGAAGAAAGCTGAGGAAAGCCACAGACAAGACAGTGCCGACCTGCTGATCTTTATCCTGCTCCTCACCCTGACAATCTTGACCATATGGTTGTTCAAACACCGCCGGTTCAGGTTTCTGCACGAGACTGGACTGGCTATGATATATGGGTTGCTTGTTGGTGTCGTCCTGCGTTATGCTATTCATGTGCCCAGCAACATGAACAATGTTACATTGAGCTGTAATGTCAATGCCAGTCCTGCCACACTGCTGATGAATGTCAGTGGTAAGTTTTATGAGTACACACTGAAAGGAGAGATCGGTGCCAATGAAGTCAATGACATTCAGGACAACGAGATGCTCCGCAAGGTGACCTTTGACCCAGAGGTCTTCTTCAATATTCTCTTGCCCCCCATCATTTTTCATGCTGGATACAGTTTAAAACGAAGACATTTCTTCAGGAACTTGGGCTCCATTCTTGTCTATGCATTTGTGGGAACCGTGGTGTCTTGTTTTATCATTGGGTTGTTAATGTATGGTTGCGTGACGCTGATGAAGCAAATTGGCCATCTGGGTGGTGACTTCTTCTTCACTGATTGCCTTTTCTTTGGTGCCATTGTCTCAGCCACTGACCCAGTAACAGTTCTGGCCATCTTCAATGAGCTGCACGTGGATTCTGACCTGTACGCTCTGCTGTTTGGAGAAAGTGTCCTGAATGATGCCGTCGCTGTCGTACTGTCCTCGTCAATTGTAGCATATCAGCCTGAGGGAGACAACACTCACACGTTTGAAGCCATGGCCATGCTGAAGTCCTTTGGCATCTTCCTGGGGGTCTTCAGTGGTTCTTTTGCTCTTGGAGTGGCAACTGGAGTCTTACTTTCATTGACTCCCTTCCACGTTACTAAGTTCACTAAGCTTAGGGACTTGCCATTGCTGGAGACGGCACTGTTCTTCCTTATGTCCTGGAGCACATTCCTACTCGCCGAGGCATGTGGATTTACAGGTGTGGTGGCGGTTCTGTTCTGTGGAATGACACAGGCTCATTACACCTTTAACAACCTGTCTCCTGAATCTCAGGACAGGACGAAACAACTGGCTGTGTTTCTGGGCAGAGCGGCGAACATCTACCCCCTCTCCTTCCTGTTGAACTTGGGCCGTAAAAACAAGATCAGCCCCAACTTCCAGCACATGATGATGTTTGCAGGTCTTCGTGGCGCCATGACTTTCGCCCTGTCAATCAGAGACACGGCCACATATGCACGGCAGATGATGTTCTCCACCACGCTGCTGGTGGTTTTCTTCACCGTTTGGATCTGCGGTGGAGGCACAACTCAGATGCTGTCCTGCCAGAAAATCCGTGTTGGAGTGGACGCAGATCAGGAGAACACTATCGGCCCTGATGGAGTGGAGTGTAGGAGCACCAAACATGAGAGCGCCTGGCCCTTCAGGATCTGTTATCTGAAGCCCATTTTGACTCATAGTGGACCACCACTCACTGCCACACTTCCTACCTGCTGTGGCCCTCTGGCACGCTGCCTCACCAGCCCACAGGCGTATGAGAATGAGGGGCAGCTGAAAGACGACGACTCTGACCTGATCCTGAATGACGGTGACATCAATCTGACGTACGGTGACATCACCGTGAGCACAGATGCTACAGGTGCTCACACGAGCGGTACGACCGTCGGAGGAGTGGCCGTGAACTCTGACGAGGCTCTGGATCGAGAGCTGGCATTCGGCGACCATGAGCTGGTGATCCGAGGCACCCGATTGGTCCTGCCCATGGATGATTCGGAGCCCCCGCTGCCTCTTGACTCCCGCCACCGGCACAATGGCTGGTTTGATGTCTCTACCTCATTCGTCCCTCTTTCTTTTACATCATCACAGAAATTGACTCTTCCGCTAACCAGACCACTTAGCATCTTACATCACGGATTGGAAGCATGCTTTGGTTTCTCTAAGTTAGTGGACTGTGTAGAAACCGCCGTTGTTTGGATGAGGGCCAGGGTGGCATCATTAACTGTGGAGCAGGAAGTGTTGATAAGGCACCGCCCTGCCAACAATGTCTGTGTGCTGGAAAGTTGTACACGTTCTGGAACGAGAGGATGACGGCTGGTCATGACAGTGGCACTGCACAGATATCTCCTGCTGTGCAGGATCATGTAATGAGAGGCCACAGTATTGTAATAACAGTGTGTGTGTGTGTGTATGTTTGAATAGATGCGGTAGAGTTAAGCATTATTAGCAGATTTGCACTTTTAATTTTTAATTTGCATTAAAAGAGATATCTGAGAAATGCCTATTACAACTTTATATTGTTTGTCAGAGCATCATAAGATGAGCAAATGAACTCCAATACAGATCATGTCACTGCTTTTTGTCCTTTGAATAAGAAATCCAGACATCCTGGTTAATTCTTCTTTTGGGGAAAAAAATGATGTCAAGAAAAAAAAAGTGTTCAGTATCTGTAAGCAGCAGCAGGATTTCTTAAATGTTTATATTTGTAGTACTGGAGA

Function

symbol description
slc9a6a Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport; regulation of intracellular pH; and sodium ion import across plasma membrane. Predicted to act upstream of or within regulation of pH; sodium ion transport; and transmembrane transport. Predicted to be located in endosome membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and recycling endosome. Human ortholog(s) of this gene implicated in Christianson syndrome. Orthologous to human SLC9A6 (solute carrier family 9 member A6).
slc9a6 Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Involved in regulation of intracellular pH. Acts upstream of or within axon extension and dendrite extension. Located in endoplasmic reticulum membrane; endosome membrane; and plasma membrane. Implicated in Christianson syndrome.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K12041 SLC9A6_7, NHE6_7; solute carrier family 9 (sodium/hydrogen exchanger), member 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_10828551_10844940.mRNA True 2829 mRNA 0.48 18 10828346 10845347

Neighbor

gene id symbol gene type direction distance location
CI01000000_10827428_10827613 NA coding upstream 284 10827428 ~ 10828062 (+)
CI01000000_10806668_10820794 INTS6L, DDX26B coding upstream 7268 10804637 ~ 10821078 (+)
CI01000000_10795622_10797214 INTS6L coding upstream 30502 10795622 ~ 10797844 (+)
CI01000000_10776465_10782715 FAM122B coding upstream 45423 10775060 ~ 10782923 (+)
CI01000000_10762185_10770168 HPRT1, HPRT1.L coding upstream 58178 10762185 ~ 10770168 (+)
CI01000000_10857057_10861468 FHL1A, FHL1 coding downstream 11478 10856825 ~ 10862365 (+)
CI01000000_10899343_10909936 NA coding downstream 53996 10899343 ~ 10910063 (+)
CI01000000_10911953_10912619 NA coding downstream 65057 10910404 ~ 10912619 (+)
CI01000000_10918542_10933419 NA coding downstream 73064 10918411 ~ 10933457 (+)
CI01000000_10938621_10941220 NA coding downstream 92738 10938085 ~ 10941598 (+)
G6957 NA non-coding upstream 2554 10824403 ~ 10825792 (+)
G6956 NA non-coding upstream 62050 10743137 ~ 10766296 (+)
G6958 NA non-coding upstream 78139 10747218 ~ 10750207 (+)
G6930 NA non-coding upstream 239699 10585662 ~ 10588647 (+)
G6929 NA non-coding upstream 243676 10584406 ~ 10584670 (+)
G7048 NA non-coding downstream 83784 10929131 ~ 10929332 (+)
G7025 NA non-coding downstream 201677 11047024 ~ 11054585 (+)
G7022 NA non-coding downstream 236185 11081532 ~ 11091287 (+)
CI01000000_11094594_11098001 NA non-coding downstream 246161 11091508 ~ 11101215 (+)
G7069 NA non-coding downstream 273826 11119173 ~ 11119379 (+)
G6820 NA other upstream 395328 10427223 ~ 10433018 (+)
G6811 NA other upstream 506667 10204831 ~ 10321679 (+)
G2850 NA other upstream 6101864 4725986 ~ 4726482 (+)
G2774 NA other upstream 6374114 4453778 ~ 4454232 (+)
G579 NA other upstream 8919538 1767917 ~ 1908808 (+)
G7018 NA other downstream 133142 10978489 ~ 10980872 (+)
G7153 NA other downstream 399110 11244457 ~ 11245633 (+)
G7514 NA other downstream 1291175 12136522 ~ 12137008 (+)
G7522 NA other downstream 1333022 12178369 ~ 12179008 (+)
G9201 NA other downstream 3382090 14215024 ~ 14234941 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location