G6957


Basic Information

Item Value
gene id G6957
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 10824403 ~ 10825792 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU7683
AAAAAAAGTACCATTCATTCCCACTGAGAGTTCACAGTATTGTTAGAATTGCTATTATACTACATGATCTATTGTGGCCCTGCTCTGACATGTTTTAATAGTTTTAATCATTTTCAGTATTATTTGAATAAGCTCAAATCAGAGCTACTGCTTCTGAACACAAATACAATTTATGGTCCACAATATTGACCTCAATTCAGAAGGGTACAGGGAAGAACCTGTTGCAGTTGGGGTTAGTTTAGCCAAAAAACATGGCAAACCAACATTGTACATGGTAGGATTCGTGCCCTGTGCGGAGAGCTACAGCTGTAACCTACAGACTTAAGACTCCCAAGCAATAACAAGTATTTACAAACATATCAGCTGGAAAAGGAGTTGGCACAGTCCATTGACAAAATAGTAACCACAAGAGATGCGTGTTTGTACAGCATATTCACATATACATAAAGATGGGAAAATATGCTTATTTTCCCTTCCAACCGAGGAGCTAACAAATAAATTTAAGAAAGAAACACAAAATGAAACCGGGCAAGGCAGCCCACAGAAGGCCAGTCTCAATGAAAATTTTCCAGCTTGCGTAACCTCAGGGGATTGGAGGGCAAGGCCTGGGGACTTGGAGTGGAGGGCTCCTGCTCTGGAGCGCGGAAAAGTACTCTGCCTCGGTGATTGAAAAGGTAGAACGACGGGTGATTTCTCAATGTGTCAAATGTCCTGTTTTTTGAGCTCTGAAGAAGCATCCATGTCTTTGAACTCGCCTGAGATGTGTACTATGCCATAACACGTGATCACAAATGATAACAAAGTCTGTAACACTATCTGAAAACACAACACAAGAGAAGCTGTATTGAGGAAAACAAATGCATGTGATTCAATAAAATCAGTGTCTGGTATTTGATTGCAACTTACATCTATAGGTAATGTTTCGTTCTCTTTTTCTGTCAGTCGCATGTAGGATCGGTCTATAAAAAAAACAACAACTTTTTTTAGGATGTATGAGAGGCATCAAACTACTCCCTTCAAACAAATGGGGTATAAATGATTTTACAACAACACAGCACTGTATTAGCAAATATCGCTCGGAAATAGTACAATATTGCTATCCTTTTTGTTCTTATTTTTAAGTTCACAACTGGATTTGTTTTCTTTGCAAAGGACACATTTGTTCAAGTGTATAATTCTATATGCTTGGCATATAATGCAAAGCTTTTTTTGCAAGTGATAGTATATGCAAAAAGATGTCACTAGGGGTAACTGTTTGCATATAGTCATGGGAAGCCCAAGTTGTTT
>TU7684
AAAAAAAGTACCATTCATTCCCACTGAGAGTTCACAGTATTGTTAGAATTGCTATTATACTACATGATCTATTGTGGCCCTGCTCTGACATGTTTTAATAGTTTTAATCATTTTCAGTATTATTTGAATAAGCTCAAATCAGAGCTACTGCTTCTGAACACAAATACAATTTATGGTCCACAATATTGACCTCAATTCAGAAGGGTACAGGGAAGAACCTGTTGCAGTTGGGGTTAGTTTAGCCAAAAAACATGGCAAACCAACATTGTACATGGTAGGATTCGTGCCCTGTGCGGAGAGCTACAGCTGTAACCTACAGACTTAAGACTCCCAAGCAATAACAAGTATTTACAAACATATCAGCTGGAAAAGGAGTTGGCACAGTCCATTGACAAAATAGTAACCACAAGAGATGCGTGTTTGTACAGCATATTCACATATACATAAAGATGGGAAAATATGCTTATTTTCCCTTCCAACCGAGGAGCTAACAAATAAATTTAAGAAAGAAACACAAAATGAAACCGGGCAAGGCAGCCCACAGAAGGCCAGTCTCAATGAAAATTTTCCAGCTTGCGTAACCTCAGGGGATTGGAGGGCAAGGCCTGGGGACTTGGAGTGGAGGGCTCCTGCTCTGGAGCGCGGAAAAGTACTCTGCCTCGGTGATTGAAAAGGTAGAACGACGGGTGATTTCTCAATGTGTCAAATGTCCTGTTTTGAGCTCTGAAGAAGCATCCATGTCTTTGAACTCGCCTGAGATGTGTACTATGCCATAACACGTGATCACAAATGATAACAAAGTCTGTAACACTATCTGAAAACACAACACAAGAGAAGCTGTATTGAGGAAAACAAATGCATGTGATTCAATAAAATCAGTGTCTGGTATTTGATTGCAACTTACATCTATAGGTAATGTTTCGTTCTCTTTTTCTGTCAGTCGCATGTAGGATCGGTCTATAAAAAAAACAACAACTTTTTTTAGGATGTATGAGAGGCATCAAACTACTCCCTTCAAACAAATGGGGTATAAATGATTTTACAACAACACAGCACTGTATTAGCAAATATCGCTCGGAAATAGTACAATATTGCTATCCTTTTTGTTCTTATTTTTAAGTTCACAACTGGATTTGTTTTCTTTGCAAAGGACACATTTGTTCAAGTGTATAATTCTATATGCTTGGCATATAATGCAAAGCTTTTTTTGCAAGTGATAGTATATGCAAAAAGATGTCACTAGGGGTAACTGTTTGCATATAGTCATGGGAAGCCCAAGTTGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7683 False 1287 lncRNA 0.34 2 10824403 10825792
TU7684 True 1285 lncRNA 0.38 2 10824403 10825792

Neighbor

gene id symbol gene type direction distance location
CI01000000_10806668_10820794 INTS6L, DDX26B coding upstream 3325 10804637 ~ 10821078 (+)
CI01000000_10795622_10797214 INTS6L coding upstream 26559 10795622 ~ 10797844 (+)
CI01000000_10776465_10782715 FAM122B coding upstream 41480 10775060 ~ 10782923 (+)
CI01000000_10762185_10770168 HPRT1, HPRT1.L coding upstream 54235 10762185 ~ 10770168 (+)
CI01000000_10753397_10759674 NA coding upstream 64479 10753397 ~ 10759924 (+)
CI01000000_10827428_10827613 NA coding downstream 1636 10827428 ~ 10828062 (+)
CI01000000_10828551_10844940 SLC9A6, SLC9A6A coding downstream 2554 10828346 ~ 10845347 (+)
CI01000000_10857057_10861468 FHL1A, FHL1 coding downstream 31033 10856825 ~ 10862365 (+)
CI01000000_10899343_10909936 NA coding downstream 73551 10899343 ~ 10910063 (+)
CI01000000_10911953_10912619 NA coding downstream 84612 10910404 ~ 10912619 (+)
G6956 NA non-coding upstream 58107 10743137 ~ 10766296 (+)
G6958 NA non-coding upstream 74196 10747218 ~ 10750207 (+)
G6930 NA non-coding upstream 235756 10585662 ~ 10588647 (+)
G6929 NA non-coding upstream 239733 10584406 ~ 10584670 (+)
G6882 NA non-coding upstream 360362 10463547 ~ 10464041 (+)
G7048 NA non-coding downstream 103339 10929131 ~ 10929332 (+)
G7025 NA non-coding downstream 221232 11047024 ~ 11054585 (+)
G7022 NA non-coding downstream 255740 11081532 ~ 11091287 (+)
CI01000000_11094594_11098001 NA non-coding downstream 265716 11091508 ~ 11101215 (+)
G7069 NA non-coding downstream 293381 11119173 ~ 11119379 (+)
G6820 NA other upstream 391385 10427223 ~ 10433018 (+)
G6811 NA other upstream 502724 10204831 ~ 10321679 (+)
G2850 NA other upstream 6097921 4725986 ~ 4726482 (+)
G2774 NA other upstream 6370171 4453778 ~ 4454232 (+)
G579 NA other upstream 8915595 1767917 ~ 1908808 (+)
G7018 NA other downstream 152697 10978489 ~ 10980872 (+)
G7153 NA other downstream 418665 11244457 ~ 11245633 (+)
G7514 NA other downstream 1310730 12136522 ~ 12137008 (+)
G7522 NA other downstream 1352577 12178369 ~ 12179008 (+)
G9201 NA other downstream 3401645 14215024 ~ 14234941 (+)

Expression


Co-expression Network