CI01000000_11075141_11078086


Basic Information

Item Value
gene id CI01000000_11075141_11078086
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 11074854 ~ 11078391 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_11075141_11078086.mRNA
TTTTAAAAGCTGGTTTGCCTGCTGTGCTTTTATATTGCAGTATGGCCTGGTTCGGAGCATTTTACTACCACGGTTATTGCCACAAATCAAGAGGGCAAAGTGAACGGCATGGGACTCACACCAACCTTAACGAACCTGGGTCCGATTCCTGCGTCTGAGAGGTTTACGGGCAATAACTGCACATGCAGATGATACAGCGGGGGAAATGGGGAAGAGTTTTGTAGGTAAATCGTAAACGTGAAAGGTTGGTTGATTTGCCAAACCCTCAGCCAAGCTTGCAACAAAACATGACAAGCCTGTCGCGGTTTAGTGGCTGCCCTCTTTCTTGCGTCAACCCTGGGGAGAGCAATACTGAACCCAGCGTGGTGCTGCCACCTTTGGCAGAGGAGCACATGGGGCACCCCACTGGCAGTTCCTTAAAACTCTGCCCCTCGCAAAATTTGCGAGACTACCACGAGACGAGGGCCAGTGCATATGTTGACCACTCGGTTAGCCATTTTCCAGACACTGGATACATCAGTCATCGCTTAGAACCCAGTCCTAGGGGCATTATCATTGGGACAAATCTGTCAGCAGCAGGCATGCCACCAGTAACTGATCAGCTGGCTCCGAGACCTAACCAACATGGCAATATTGGAAGGTACCGTGACCTCCACAGCTATAGGGATGGCAGGAGCCACTCGTTCTTCAGCACGTATCAAGAGCAGGCCCATGGCTCTTCAGACACCACTCGAGATCTCAGCAGCCAAATGATGTTGGGTCTTCCCGGAGATCTTCTCTCACGAACGCACCCGTATGGGCAGTCGGTCAGTGGCCCCAGGGCCAACAGCCAGCAGCTAGTCACCCAGTTCTTGGAGTTCTATAAGCCTCTGAACATGGCCATGCAACGAGGAGGGGGTGACGCCTTCCTCAGTGGAATTCTTTTTGATTTCGTTTTTAGAAACGTTCGTGCTGGTGAGAAACCGTTTAAATGTGAGTTTGAGGGCTGCAATCGGAGATTTGCAAACAGCAGTGACCGGAAGAAGCATTCTCACGTTCACTCCAGCGATAAACCCTACACGTGCAAGGTCAGAGGCTGTGAAAAATGTTACACACATCCCAGCTCCTTGCGCAAACACATGAAACTCCATTGCAAGGCCTACATTGCCAAAATCGGCGAAGACGACGAGCACCTTGTAGAAGCCAGGTCTCCTGAGGTGGCAGAACAGCAAGACACACCCGCCTCTACCACAGTGACGCGAACGATGACGACCCCCTCCCAAGAGACTCTGTCTCCTGAGACGCGAAATGAGTCGACTATGAGGTCACGTTTCCATCACACTTTTGAAAACAGTTTGGACTATACGGCGCACAGGCCACAGTCCCTTTTGGACCCTCTGTTGCTACAGCGGGGCAGTTACAGACCCGAGTCTGTTCAATACTCATGCAACCAACCGAGCCATACGTTCGCACCTAGCCATAGAACTTTCACGTCCAGCTCACCTTTTCAAAAAAGTCTGGTAAATGGCTGGTACACATGTCATAGCGCCGTGGACACCTTTTCACCCAAACACTGCAACAGTGATTTATAATGTCTGTAATTCGGGCTTGTGCTCGGCGTGTTAAAGCACTGACGGATGACAGCCGAAGGGTTCCTCCTCATGTAAAATTGTCCCACAGGCTTACTAAATAGGATAGTGCAATTTGTTACTGTGAGCTTTATCTGTTGTACTTTATGTTCTTGTATTGGTGAGACGTCGGTGAATGTTCCTAAACTGTAAATAGCTTAATTAACCTTGCCTAAATATCTATAAAAGTATTGATAAGCTGCCAAAATAGTCATATATCAAATATAAAATATCTGCAAACAAGATACCCACAGATATAGTTCGAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_11075141_11078086.mRNA True 1876 mRNA 0.49 3 11074854 11078391

Neighbor

gene id symbol gene type direction distance location
CI01000000_10984317_10995531 TM9S2, TM9SF2 coding upstream 79260 10984317 ~ 10995594 (+)
CI01000000_10938621_10941220 NA coding upstream 133256 10938085 ~ 10941598 (+)
CI01000000_10918542_10933419 NA coding upstream 141397 10918411 ~ 10933457 (+)
CI01000000_10911953_10912619 NA coding upstream 162235 10910404 ~ 10912619 (+)
CI01000000_10899343_10909936 NA coding upstream 164791 10899343 ~ 10910063 (+)
CI01000000_11094594_11098001 NA coding downstream 14206 11091508 ~ 11101215 (+)
CI01000000_11137352_11139990 NA coding downstream 58447 11136838 ~ 11140025 (+)
CI01000000_11272091_11279011 NA coding downstream 193502 11271893 ~ 11279599 (+)
CI01000000_11335685_11340519 F9A coding downstream 256011 11334402 ~ 11340732 (+)
CI01000000_11381704_11382225 NA coding downstream 301486 11379877 ~ 11382288 (+)
G7025 NA non-coding upstream 20269 11047024 ~ 11054585 (+)
G7048 NA non-coding upstream 145522 10929131 ~ 10929332 (+)
G6957 NA non-coding upstream 249062 10824403 ~ 10825792 (+)
G6956 NA non-coding upstream 308558 10743137 ~ 10766296 (+)
G6958 NA non-coding upstream 324647 10747218 ~ 10750207 (+)
G7022 NA non-coding downstream 3141 11081532 ~ 11091287 (+)
G7069 NA non-coding downstream 40782 11119173 ~ 11119379 (+)
G7101 NA non-coding downstream 87427 11165818 ~ 11166064 (+)
G7109 NA non-coding downstream 96965 11175356 ~ 11176077 (+)
G7018 NA other upstream 93982 10978489 ~ 10980872 (+)
G6820 NA other upstream 641836 10427223 ~ 10433018 (+)
G6811 NA other upstream 753175 10204831 ~ 10321679 (+)
G2850 NA other upstream 6348372 4725986 ~ 4726482 (+)
G2774 NA other upstream 6620622 4453778 ~ 4454232 (+)
G7153 NA other downstream 166066 11244457 ~ 11245633 (+)
G7514 NA other downstream 1058131 12136522 ~ 12137008 (+)
G7522 NA other downstream 1099978 12178369 ~ 12179008 (+)
G9201 NA other downstream 3149046 14215024 ~ 14234941 (+)
G10201 NA other downstream 4851875 15930266 ~ 15930562 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007382 zic6 coding NC_007125.7 CM002898.2 32022272 ~ 32026099 (+)
bowfin (Amia calva) AMCG00021336 NA coding CM030130.1 CM030130.1 15024008 ~ 15028310 (-)