CI01000000_11577295_11582295 (NKRF)


Basic Information

Item Value
gene id CI01000000_11577295_11582295
gene name NKRF
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 11576427 ~ 11582337 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_11577295_11582295.mRNA
ATATAAAAATCTGACTTCAGATCAAGTGTTATCAAATGTGTCTTAAGCAGTGTAAATGAATGAATGAACGAACAAATGAATGCGTTTCTCTCTTCCTGAGTGGATTAGCTTTAGCACTTTCAGCTTTAGCTGCAGTTTAGTTTGAGCGTCTAAATTCACCTGAAAGCGTAGCGGCTTTACAATCTCAAAAGCAGCTAAACAGAGCCGCTGTACGACAAAGGTAAGCTTCACATAGTGTTATGCTATGTACATCGACGTGTAGTTCACAGTAAATGCGCATAAGCAGCATGACAAAACTGAAGAATAGTGTGAGAGAATGAAAATGCTACTGCGTCACTTAGTTTCATCCAAAGAGACAACTTGTTAGCTTAACCATAAGGGAAAACAACAAATTTAAAAGGCGAATGCTTGACGAACTCTGTAGATTAAAGAGTTACAGGTGTGCTATTTAAAATACAAATTGAATACATTGTGAGTAATATGGCTAAAGTTGTTTTGAATCCGAATGACAGACTGTTGCGAGGTCTGTTATCATATTGTCAAATGTCATAGTAAATGAATTGGGCAAGTACAGATCAGATCATGTTGATTTTATTAAGTTTACCAAAGAAGTATCTGATTGTAAGCATTGGCTAGCTTACATATTCTGTTCTGCATCGGGTGTATCATAATATTTTTGGGCCGTGTGACGTTCCCAGCTTCAGTGAGTGTTGCCAAGTGTTGCTACTTTAACACTGTTGCCGCGTGTAGTTTGTGTAGTCCCCAGGTGAAACGAACAGCCTCCCTGCAGACCTGGCAACCCTGCCCAGCCTGCACTGTGCGCACTACGTTGTTTCCGGTTAGCTGCTCGCTATCATTAGACACCGGGATGATCAGACACCATTCAACGGGCCCGCGTGTTTCAAGTAAACCCGCTGGTCTGCGCGATTCGACTTGTAATATCGATGATTATCGTCAGCAGTTTGAGAGTGATAAGCAGTGGTCCGCCAGACGTCAGTTCATATTGAAACACGCTGCGGAGTACGAGGAAAATGCTCTTGATAAGCTACTGGCCCTGTCGATGGTGTGGGTTAACCATGTTTTCCTGGGATGCAGGTATGGCTCCCAACTAATGCAGAAGGTGCTTGAGATGGCAGAAGGGATTGATGTTGGTGAAATGCCCTCATATGAACTAGTTCCGAATGCTGAATCAAAAAAGAGACCACATTCATCTGATGGAAGTGAAGATCCCACAAGGAAGATGCCTGTGTCAAAATTCACTTCCAGACCTCGATTTGAGCCAGTGCACTTTGTGAGTGGTGGGAACAGCGGCAGTGGAATTGGAGAAACTGACGAAAAAGAAAATGAGAAGGAGCGCAGGAGGGGCGAGATGAATGAAGTAAAACCGAGGGAACAAGATCATCAGCCGTATAATGGTAACCATGGCAATGGCCCTTCTTCCTCCTCTGGCTCCCTTGAGATAGGGAGGTGCGATTATGATTCTTGGCCTGAGCACAGAAGCAAGGACGTGGTTGTGGGCGTCACAAGTGGGCTTGGCTATGGCAGCAGAGGGTCTGCCGCGAACTTCATGTGCAAAGTGCAGCAGGAGTACACTGCTAAATATGAGGCTCATAATGCCAAACAGTCAGAATCATTCTCACAGGCAGGCAGAGTTAAGGAATACCGAGGTGCTGGACGGTCTGGAGCCGTGGTTAGCGGGCAGTGTGGACTGGGATTTGGACATCAGGATAGGCCAACCTCCAGCAAGGCTTTCAGCAGGGCATACGATGGTCCAAGCAGAGGCGGCTCTGGCCTTCTCCCTACACCCTCTCGGCCGACTTCTATACCCGCAGCAATAATTGACGAAAAACAGAGGCTTATTGCCAGAGTATCGTCTGCCGTTGCCATCACCCTCAGAGATCCTGCGTTCATGAGTGGACCTGATGGCCCAAATTACAATTTCATACTTAGCCGCAGCATTCAGGCCTGCAAGACAAACCCAGAGTACATCTATGTCAATTTAAGAGATATTCCACCTGCTGACCTTCCTAAGAACAGAAAAGTGCCCACTGAAGGATATGCTTGTGAACTTAGGTTTCAGTGTGTGTACCTTGCCACGGGGTACTCTGGGAGCAAAAACGGTGCCAGAGACCGAGCGTCAGAACTGGCTGTCAAGCTGTTCATGAGGCCGGTGGAAGTCCGTGTCTTACAACGGCAGTACAAGCGTACTTGCGTCAATGACATGGTGGTGTGCCAAGTTAACACTCCAAACCCAACCCTCCCCCCACCTCTGCGCAACCCAGAGGACAAGCCGTCCCCTAGTACCAAGGGCCAGTATGAGCCTGACCAAAGCAAACACTGGACAGAATTTGTAATTATGGAGAATGCACATGATGCCATCTGTATACTCAACAACTCAGCTGCGTTCAACCGCATGAAAGTTGATTACACTTTTGACCCGGTTCCCAACAACAATTTATGGCTCTGTAGTGTGTACTTGCAGGGTGAGCTGGTGGCGCAAGCCAGAGGGACCAAGAAGAGCTCGAAACACGCAGCGGCAGAGGAGGCGGTGAGGAAGTTGCGAATGAACCAGACTGCTCGCCAACAAGAGCAGCAGCAGCAGCATTTCTCTGGAGGGAACCACACTTCAGGCCAGCCCGGTAGTTGGTACACCCAGCAAAGCAGCAAGAAAGCACTGCTGGGTGAATTGGTCATTCTTGAAAACTCTGATAACGCTATTTGTATAATAAATGACACTGCTCAATTTAATAAAGTGCTTGCTGACTACAAGTTCACGGTTCTGCCGGACCATAGCTGGCAGTGTGAAGTTTACCTAGATGGTAAGTATGTGGCTACAGGTGTTGGGCCCAAAAAGACAGTGAAGCATATTGCAGCAGAGGAAGCCCTTGCCACACTTCGACGCACACAGGCTGTAGTGAAATCCAACCTTAGGAAGGAGGGCCATGTGGATGCAATTTCCCGAAATCAAATCATGGCTCGTTCTAGCGAGGAATCCATGCAACAGGAGATCAAGGAAGACAACATTGGTAACCAGCTACTCCGTAAGATGGGCTGGACGGGTGGTGGTTTGGGTAGAGAAGGAGAGGGCATTGCTGAGCCCATCAGAGTCAAAGAGCAGTTTACCAGGGAAGGACTCGGTATGGACATGGACAGGCAAGGTAATCAGCTGACTAAGCATGATATTGAGAAAATCATTCAGAATTATGCGAGTTCAGACCGTCAAGATGATCTGCGCTTCTCTACGGAGCTCAACAATGAAGAGCGCCGGCACATCCACCAGATATCCCACAAGTACGGGCTGCGCAGCAAATCGTACGGACAGGGCCGACAACGCTTTCTTGTGGTTAGCCGCAGAGTCCAGAAGGAACAGCTGATTGGTCAGCTTTTGCAGGAAGGACAGGTGGGACGATATGAACTGGTGAAACCTCAGCCTTCACAATGACTGGGTTCAACAGGCTTTTGAAAATCCAACAGATGACTATTA

Function

symbol description
nkrf Predicted to enable nucleic acid binding activity. Predicted to be active in nucleolus and nucleoplasm. Orthologous to human NKRF (NFKB repressing factor).

GO:

id name namespace
GO:0005654 nucleoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_11577295_11582295.mRNA True 3484 mRNA 0.48 3 11576427 11582337

Neighbor

gene id symbol gene type direction distance location
CI01000000_11569924_11573883 ARR3, ARR3B coding upstream 1594 11569924 ~ 11574833 (+)
CI01000000_11479843_11484323 NA coding upstream 91365 11478027 ~ 11485062 (+)
CI01000000_11381704_11382225 NA coding upstream 194139 11379877 ~ 11382288 (+)
CI01000000_11335685_11340519 F9A coding upstream 235695 11334402 ~ 11340732 (+)
CI01000000_11272091_11279011 NA coding upstream 297303 11271893 ~ 11279599 (+)
CI01000000_11627091_11639685 LNX2B coding downstream 43794 11626131 ~ 11640584 (+)
CI01000000_11706374_11719063 TEX11 coding downstream 124037 11706374 ~ 11719339 (+)
CI01000000_11764996_11788451 NA coding downstream 181910 11764247 ~ 11788720 (+)
CI01000000_11842893_11845222 PDZD11 coding downstream 260035 11842372 ~ 11845845 (+)
CI01000000_11893395_11894471 NA coding downstream 311000 11893337 ~ 11894603 (+)
G7347 NA non-coding upstream 138386 11436367 ~ 11438041 (+)
G7341 NA non-coding upstream 147729 11427847 ~ 11428698 (+)
G7331 NA non-coding upstream 161913 11411907 ~ 11414514 (+)
G7292 NA non-coding upstream 256343 11318039 ~ 11320084 (+)
G7291 NA non-coding upstream 260325 11315813 ~ 11316102 (+)
G7230 NA non-coding downstream 20741 11603078 ~ 11604033 (+)
G7242 NA non-coding downstream 23263 11605600 ~ 11606006 (+)
G7284 NA non-coding downstream 23840 11606177 ~ 11606617 (+)
G7228 NA non-coding downstream 25291 11607628 ~ 11608020 (+)
G7248 NA non-coding downstream 151594 11733931 ~ 11891806 (+)
G7153 NA other upstream 330794 11244457 ~ 11245633 (+)
G7018 NA other upstream 595555 10978489 ~ 10980872 (+)
G6820 NA other upstream 1143409 10427223 ~ 10433018 (+)
G6811 NA other upstream 1254748 10204831 ~ 10321679 (+)
G2850 NA other upstream 6849945 4725986 ~ 4726482 (+)
G7514 NA other downstream 554185 12136522 ~ 12137008 (+)
G7522 NA other downstream 596032 12178369 ~ 12179008 (+)
G9201 NA other downstream 2645100 14215024 ~ 14234941 (+)
G10201 NA other downstream 4347929 15930266 ~ 15930562 (+)
CI01000000_17339270_17345013 CXCL14, CXL14 other downstream 5756817 17339154 ~ 17346200 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007388 nkrf coding NC_007125.7 CM002898.2 32852388 ~ 32858973 (+)