LOC122353980


Basic Information

Item Value
gene id LOC122353980
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8553416 ~ 8667800 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU118559
gtcagttcATCACTCTTTCAGTGACAGGGTGACATGGTGCTGCTCCTCTCCCTCATCTTTACACTCTTTCTGGAGGTTCAGCCTCAAGTTCAGAAAGACTCAAGCACAGCACTGAGACATGATGAACGAGAAACACTGTCTCATTTGAATCAGAGTAAGGTGTTCTTTTTGCACTGTAAAGTATTACAGTAAAATCTTATTGTTAAGCCTCGAGTATCATTAACTCTTCTATTAAGCATGATCATAATCTAATGCTCTACTAtcacatgactgtgtgtgtttgcagatgAGCGGCCAAACATTAAAGTTGTGTCTGATTCTGAAAATGGTGAATTTAGAGTTCTCTGTGAAATACCAGGATCAGATAACGGtggttatatttgttttctgtctctTGGAGATGAATATCCACAATTTAAAAAGATACAGTCTCATGTACTGTCTGGAAAAACACAGTGTCTTTTTACAGTCTTGGATTATGAATTTTCAAATAATCTGAAGTCACTCGAGAATAAAGTAGTGAGCTGCAGTTATTCTTCAAAAAACACACCATCCAAACTATCATATAGTGACAAGTTCAACATAACAGATCTTTTTCCTGTAAAAATTCAGTCACCACAAACAACAAAGGGAACATTAACAGCTCTGGCTACAGAATCCAGTACTTGTTCTGAGACCACAACAAACCTTCCAACTGATCTTTTTCCTGTAAAAACTCAGGCACCACAAACAACAAAGGGAACATTAAattcaACATCAACTTTCTCTATAAATACTACAACAATAGAGTCAAAAACTCTGGCTACAGAATCCAGTACTTGTAATGAGACCACTATAAACCCTCCAACTGAATCTACTCATCTGTCACAACTCAATGCCACATGGAGCATGACAGCAGTTCTCGAAGTTTCAACTCCTGGTGAAAATGCTTTTGATAGAACATCAAGAAAAAAAACAGGGCTCATCCTGACACTGGCAGCCACAAGCTCAGGGATTTTCCTGACCGGACTCATGGGCATCTTTCTGTGCTGCCTCAGACTGCAAACAAGGAAGAAGAGATGAAACTGATTCCAAAGTTCAACGTTCTGAAGAAAATGAGAAGAAGCTGTACCATGTTTACTGCACCATCCCTGATGTCGCTGCAGACAGTCATGAGTTATACAGTCTGGCACAAATGCCAAAACATCCTCTGccagtttaatttttattccatcatattacaataattaaactaattgaCATTAAAAGAGAATGGGAATGTTTCACTTTCGATCaaactatttttcttttctaataatcaaaaagcaatgtcagaaaaaaaagttttatgtagTGTCGGCCTATTAATGCCATGAATGTTTTAACTGTGAgaatttgtgatttaaaaatcatCTGACTAACACATCATTGCATCCTTGAATTAGTGCCTTGTTGCTATTTGTTAAAGCTAAAGGACAtcaaacattatataatacttaattatttaattattttagtaaaaatttATACCTAAGAGTATAAAAGCCCTGTAGGGACAAGGGCAACAGTCTGTAGATGGTGTTGCAGAGGCCATTTGGACTGAAAACTGCTGAAGGATGCTACAAGTTGTGAGAGAAAGTGGGCTAAATGCAAAGCAGCGTGTTGCAATAAGCTGTTCTTAGAAAGAAATGATTTACCAGCGGCATAGAGGTTTTCAAGCGAGTGCGGGAAAGTAGTGTGTAGCAGAAAAGGTcctttaaaatttgaaattattgAACAGGATAAGAATTCATCATATATTTTGCATCTCTCAGCCTTATCAAAAATAGGAATTGTCCTTTTTTCTCACACTTATGTGCACCACATTTTCTCCCCCACTCactttcatcactttcagactttctctctcacacggACAGGCAATTGCAGCTGATAGTTTAGATCTTTTACTACCactttaactgtaaataacaaTAGAGGaataaagtaaatgttaaatgtgtgcACTTGATAAAGTACTGAAATATTATATGTCTTATAATCTCTCAATAGTTGGTGGAGTCCTTCATCCCATATTTGCAAGATGTTCAtaatttgtgggtttttttttttaaatgtcaagaatgtgtaccaaaaaaatatattttttatactttgtgaATAAATATGACTGTGTTTGCCTCTAATAAATCGCTACCAAACATTACAA
>TU118561
TCTTTTCCTGTAAAAATCCAGTCACCACAAACAACAAAGGGAACATTAACAGCTCTGGCTACAGAATCCAGTACTTGTTCTGAGACCACAACAAACCCTCCAACTGATCTTTTTCCTGTAAAAACTCAGGCACCACAAACAACAAAGGGAACATTAAattcaACATCAACTTTCTCTATAAATACTACAACAATAGAGTCAAAAACTCTGGCTACAGAATCCAGTAATGAGACCACAATAAACCCTCCAACTGAATCTACTCATCTGTCACAACTCAATGCCACATGGAGCATGACAGCAGTTCTCGAAGTTTCAACTCCTGGTGAAAATGCTTTTGATAGAACATCAAGAAAAAAAACAGGGCTCATCCTGACACTGGCAGCCACAAGCTCAGGGATTTTCCTGACCGGACTCATGGGCATCTTTCTGTGCTGCCTCAGACTGCAAACAAGGAAGAAGAGACCTGTGAATACTTGTGTAGCAGCCGTTTCCCAGACCCCAGATGAAACTGATTCCAAAGTTCAACGTTCTGAAGAAAATGAGAAGAAGCTGTACCATGTTTACTGCACCATCCCTGATGTCGCTGCAGACAGTCATGAGTTATACAGTCTGGCACAAATGCCAAAACATCCTCTGccagtttaatttttattccatcatattacaataattaaactaattgaCATTAAAAGAGAATGGGAATGTTTCACTTTCGATCaaactatttttcttttctaataatcaaaaagcaatgtcagaaaaaaaagttttatgtagTGTCGGCCTATTAATGCCATGAATGTTTTAACTGTGAgaatttgtgatttaaaaatcatCTGACTAACACATCATTGCATCCTTGAATTAGTGCCTTGTTGCTATTTGTTAAAGCTAAAGGACAtcaaacattatataatacttaattatttaattattttagtaaaaatttATACCTAAGAGTATAAAAGCCCTGTAGGGACAAGGGCAACAGTCTGTAGATGGTGTTGCAGAGGCCATTTGGACTGAAAACTGCTGAAGGATGCTACAAGTTGTGAGAGAAAGTGGGCTAAATGCAAAGCAGCGTGTTGCAATAAGCTGTTCTTAGAAAGAAATGATTTACCAGCGGCATAGAGGTTTTCAAGCGAGTGCGGGAAAGTAGTGTGTAGCAGAAAAGGTcctttaaaatttgaaattattgAACAGGATAAGAATTCATCATATATTTTGCATCTCTCAGCCTTATCAAAAATAGGAATTGTCCTTTTTTCTCACACTTATGTGCACCACATTTTCTCCCCCACTCactttcatcactttcagactttctctctcacacggACAGGCAATTGCAGCTGATAGTTTAGATCTTTTACTACCactttaactgtaaataacaaTAGAGGaataaagtaaatgttaaatgtgtgcACTTGATAAAGTACTGAAATATTATATGTCTTATAATCTCTCAATAGTTGGTGGAGTCCTTCATCCCATATTTGCAAGATGTTCAtaatttgtgggtttttttttttaaatgtcaagaatgtgtaccaaaaaaatatattttttatactttgtgaATAAATATGACTGTGTTTGCCTCTAATAAATCGCTACCAAACATTACAA
>TU118562
gtcagttcATCACTCTTTCAGTGACAGGGTGACATGGTGCTGCTCCTCTCCCTCATCTTTACACTCTTTCTGGAGGTTCAGCCTCAAGTTCAGAAAGACTCAAGCACAGCACTGAGACATGATGAACGAGAAACACTGTCTCATTTGAATCAGAatgAGCGGCCAAACATTAAAGTTGTGTCTGATTCTGAAAATGGTGAATTTAGAGTTCTCTGTGAAATACCAGGATCAGATAACGGtggttatatttgttttctgtctctTGGAGATGAATATCCACAATTTAAAAAGATACAGTCTCATGTACTGTCTGGAAAAACACAGTGTCTTTTTACAGTCTTGGATTATGAATTTTCAAATAATCTGAAGTCACTCGAGAATAAAGTAGTGAGCTGCAGTTATTCTTCAAAAAACACATCATCCAAACTATCATATAGTGAAAAGTTCGGCATAACAGATTTTTATCCTGTGAAAATTCAGTCACCACAAACAACAAAGGGAACATTAACTCTGGCTACAGAATCCAGTACTTGTTCTGAGACCACAACAAACCTTCCAACTGTTCATCACTCTTTCAGTGACAGGGTGACATGGTGCTGCTCCTCT
>TU118567
TCTTTTCCTGTAAAAATCCAGTCACCACAAACAACAAAGGGAACATTAAattcaACATCAACTTTCTCTATAAATACTACAACAATAGAGTCAAAAACTCTGGCTACAGAATCCAGTAATGAGACCACAATAAACCCTCCAACTGAATCTACTCATCTGTCACAACTCAATGCCACATGGAGCATGACAGCAGTTCTCGAAGTTTCAACTCCTGGTGAAAATGCTTTTGATAGAACATCAAGAAAAAAAACAGGGCTCATCCTGACACTGGCAGCCACAAGCTCAGGGATTTTCCTGACCGGACTCATGGGCATCTTTCTGTGCTGCCTCAGACTGCAAACAAGGAAGAAGAGACCTGTGAATACTTGTGTAGCAGCCGTTTCCCAGACCCCAGATGAAACTGATTCCAAAGTTCAACGTTCTGAAGAAAATGAGAAGAAGCTGTACCATGTTTACTGCACCATCCCTGATGTCGCTGCAGACAGTCATGAGTTATACAGTCTGGCACAAATGCCAAAACATCCTCTGccagtttaatttttattccatcatattacaataattaaactaattgaCATTAAAAGAGAATGGGAATGTTTCACTTTCGATCaaactatttttcttttctaataatcaaaaagcaatgtcagaaaaaagttttatgtaGTGTCGGCCTATTAATGCCATGAATGTTTTAACTGTGAgaatttgtgatttaaaaatcatCTGACTAACACATCATTGCATCCTTGAATTAGTGCCTTGTTGCTATTTGTTAAAGCTAAAGGACAtcaaacattatataatacttaattatttaattattttagtaaaaatttATACCTAAGAGTATAAAAGCCCTGTAGGGACAAGGGCAACAGTCTGTAGATGGTGTTGCAGAGGCCATTTGGACTGAAAACTGCTGAAGGATGCTACAAGTTGTGAGAGAAAGTGGGCTAAATGCAAAGCAGCGTGTTGCAATAAGCTGTTCTTAGAAAGAAATGATTTACCGGCGGCATAGAGGTTTTCAAGCGAGTGCGGGAAAGTAGTGTGTAGCAGAAAAGGTcctttaaaatttgaaattattgAACAGGATAAGAATTCATCATATATTTTGCATCTCTCAGCCTTATCAAAAATAGGAATTGTCCTTTTTTCTCACACTTATGTGCACCACATTTTCTCCCCCACTCactttcatcactttcagactttctctctcacacggACAGGCAATTGCAGCTGATAGTTTAGATCTTTTACTACCactttaactgtaaataacaaTAGAGGaataaagtaaatgttaaatgtgtgcACTTGATAAAGTACTGAAATATTATATGTCTTATAATCTCTCAATAGTTGGTGGAGTCCTTCATCCCATATTTGCAAGATGTTCAtaatttgtgggtttttttttttttttaaatgtcaagaatgtgtaccaaaaaaatatattttttatactttgtgaATAAATATGACTGTGTTTGCCTCTAATAAATCGCTACCAAACATTACAA
>XM_043251925.1
GTTCATCACTCTTTCAGTGACAGGGTGACATGGTGCTGCTCCTTTCCCTCATCTTTACACTCTTTCTGGAGGTTCAGCCTCAAGTTCAGAAAGACTCAAGCACAGCACTGAGACATGATGAACGAGAAACACTGTCTCATTTGAATCAGAatgAGCGGCCAAACATTAAAGTTGTGTCTGATTCTGAAAATGGTGAATTTAGAGTTCTCTGTGAAATACCAGGATCAGATAACGGtggttatatttgttttctgtctctTGGAGATGAATATCCACAATTTAAAAAGATACAGTCTCATGTACTGTCTGGAAAAACACAGTGTCTTTTTACAGTCTTGGATTATGAATTTTCAAATAATCTGAAGTCACTCGAGAATAAAGTAGTGAGCTGCAGTTATTCTTCAAAAAACACATCATCCAAACTATCATATAGTGAAAAGTTCGGCATAACAGATTTTTATCCTGTGAAAATTCAGTCACCACAAACAACAAAGGGAACATTAACAGCTCTGGCTACAGAATCCAGTACTTGTTCTGAGACCACAACAAACCTTCCAACTGATCTTTTTCCTGTAAAAATTCAGTCACCACAAACAACAAAGGGAACATTAACAGCTCTGGCTACAGAATCCAGTACTTGTTCTGAGACCACAACAAACCTTCCAACTGATCTTTTTCCTGTAAAAACTCAGGCACCACAAACAACAAAGGGAACATTAAattcaACATCAACTTTCTCTATAAATACTACAACAATAGAGTCAAAAACAGCTCTGGCTACAGAATCCAGTACTTGTAATGAGACCACTATAAACCCTCCAACTGAATCTACTCATCTGTCACAACTCAATGCCACATGGAGCATGACAGCAGTTCTCGAAGTTTCAACTCCTGGTGAAAATGCTTTTGATAGAACATCAAGAAAAAAAACAGGGCTCATCCTGACACTGGCAGCCACAAGCTCAGGGATTTTCCTGACCGGACTCATGGGCATCTTTCTGTGCTGCCTCAGACTGCAAACAAGGAAGAAGAGATGAAACTGATTCCAAAGTTCAACGTTCTGAAGAAAATGAGAAGAAGCTGTACCATGTTTACTGCACCATCCCTGATGTCGCTGCAGACAGTCATGAGTTATACAGTCTGGCACAAATGCCAAAACATCCTCTGccagtttaatttttattccatcatattacaataattaaactaattgaCATTAAAAGAGAATGGGAATGTTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118559 True 2188 lncRNA 0.36 14 8553416 8667800
TU118561 False 1632 TUCP 0.36 12 8553416 8666340
TU118562 False 606 TUCP 0.39 6 8561584 8667800
TU118567 False 1526 TUCP 0.36 11 8553416 8666340
XM_043251925.1 False 1240 mRNA 0.39 16 8554339 8569366

Neighbor

gene id symbol gene type direction distance location
LOC122353982 NA coding downstream 2856 8544452 ~ 8550560 (-)
LOC122353695 NA coding downstream 50050 8499207 ~ 8503366 (-)
parapinopsinb parapinopsinb,LOC107743248,LOC107659528,LOC107751249,LOC107686001,LOC107582428 coding downstream 108520 8435583 ~ 8444896 (-)
tkta tkta,LOC107578334,LOC107743250,LOC107582382,LOC107694867,LOC107751206 coding downstream 212631 8323592 ~ 8340785 (-)
bicd2 bicd2,LOC107743251,LOC107694868,LOC107578651,LOC107696460,LOC107582381 coding downstream 234527 8306278 ~ 8318889 (-)
ldlrad2 ldlrad2,LOC107686014,LOC107751250,LOC107582454,LOC107743277 coding upstream 35575 8703375 ~ 8707985 (-)
LOC122353986 cyb561d1,LOC107743243,LOC107751251,LOC107577342,LOC107685989,LOC107659550 coding upstream 62030 8729830 ~ 8734728 (-)
atxn7l2a atxn7l2a,LOC107659549,LOC107685990,LOC107576132,LOC107715761,LOC107718222 coding upstream 67577 8735377 ~ 8743885 (-)
sypl2a sypl2a,LOC107577447,LOC107715783,LOC107659548,LOC107718190,LOC107582376 coding upstream 76841 8744641 ~ 8752351 (-)
zgc:172270 zgc:172270,LOC107685982,LOC107715787,LOC107659543,LOC103029205,LOC108435351,LOC107580652 coding upstream 118801 8786601 ~ 8789971 (-)
G80130 NA non-coding downstream 17703 8508647 ~ 8535713 (-)
LOC122353969 NA non-coding downstream 102802 8445250 ~ 8450614 (-)
G79971 NA non-coding downstream 327414 8218760 ~ 8226002 (-)
G79970 NA non-coding downstream 334994 8218114 ~ 8218422 (-)
G79969 NA non-coding downstream 335366 8217743 ~ 8218050 (-)
LOC122353992 NA non-coding upstream 1456 8669256 ~ 8683250 (-)
LOC122353991 NA non-coding upstream 2333 8670133 ~ 8675735 (-)
G80202 NA non-coding upstream 166291 8834091 ~ 8834625 (-)
G80205 NA non-coding upstream 179720 8847520 ~ 8850183 (-)
G80218 NA non-coding upstream 246673 8914473 ~ 8915970 (-)
LOC122354573 NA other downstream 14872 8532773 ~ 8538544 (-)
LOC122354572 NA other downstream 33396 8508659 ~ 8520020 (-)
LOC122353694 NA other downstream 56131 8491771 ~ 8497285 (-)
LOC122354197 LOC107694863,LOC107582459,LOC107751197,LOC107697444,LOC107581824 other downstream 346575 8196472 ~ 8206841 (-)
G79967 NA other downstream 357031 8195818 ~ 8196385 (-)
LOC122353984 NA other upstream 28650 8696450 ~ 8700757 (-)
thsd7bb NA other upstream 1145822 9813622 ~ 9866553 (-)
cntnap5l cntnap5l,LOC107687751,LOC107581667,LOC107685949,LOC107715775,LOC107718238,LOC107572029 other upstream 1227916 9895716 ~ 9961124 (-)
G80581 dennd4a,LOC107596978,LOC107686292,LOC107672237,LOC107583773 other upstream 1577802 10245602 ~ 10254848 (-)
LOC122354283 mfn2,LOC107710790,LOC107748965,LOC107602467,LOC107698839,LOC107678429,LOC107701405,LOC107552408,LOC107661155,LOC107558363,LOC107706807 other upstream 2083397 10751197 ~ 10758842 (-)

Expression


Co-expression Network