G80581 (dennd4a,LOC107596978,LOC107686292,LOC107672237,LOC107583773)


Basic Information

Item Value
gene id G80581
gene name dennd4a,LOC107596978,LOC107686292,LOC107672237,LOC107583773
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 10245602 ~ 10254848 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU119173
GAGTCTGGAGCTGAGCGCATCTCTGAAAGCGTATAGGGAAGATGAGGCACAGCCCTCCCGGAGGGAATGTTTATACGTGATAGAGGAATAATTTATTTGTCTGATGAAAATGGACGGAAATACATAAGGGCCTTCTGCAGTCCAGtgattaataatcaaaataacgGTCCGTGTTTCAATGAGCGTGTCCTCTGAATCGTCGACCTACTGAAACACATATATAGTCCTCGTTTTATGGGGATGATCGAAGATGGAAGACAAAAGCCTTCGTGTAGCAGACTACTTTGTGGTGGCAGGACTCACCGACTCGTCTAAGCCCCTCGAGGAAGATGTCCACCCTGAGGATGGAGGTCATAGGACTTCAGCCCAGCTAAAGGCGCCCATCACTGATGTGGCTGTGGTGATTCGCTCCCTAGGGGAGGAAGTACCTCGAGGATATATCTGCGTTGAATGCACCCCCTCTGGACTTCCTGCCGAACTGAATGGAGGAAGCCTCATGGGGCCGCAGATCTTCCTCTGCTATAGGAGAGGCAGAGACAAACCGCCGCTCACAGACTTGGGCGTGCTCTTTGAGTGGAAGGAGAAACTGAAGCCGGACTGTCAAATTATACAGACCACACCCTCTGGCCGCCCCGCTAATATCAGTAGCTCCTCCTCCCAAAGGATCTACATAACATATCGGCGTGCCTCTGAGAATCACTCTCACGCCACGCTGGCTGTCACAGACATCTGTGTCATTGTTCCCGGCAAGGGAGAGACACCACCGCATGCTTTCTGCAAGGTGGACAAGAATCTCAACAGCAGTATGTGGGGGTCCTCTGTGTACTTGTGCTACAAAAAATCTTTGGCCAAAAGCAACACACTTGCATTCAAAGCAGGTTTACGGTGCCGCCATCCAGTTCTATGAGCCCTACCCAGAAGAACATTTGACTGACAAGCAGTGTTCTCAGCTGGGCCTGCAGGCTAACGGGCTCAGGCCTGATGGATCCATGACTGTTCACACCAACAAAAGCATCTGCCTTCTCTCTCACTGGCCCTTTTTTGATGCTTTCCGTAACTTTCTGACCTTTCTTTACCGATACTCCATCTCAGGTCCACACACTCTGCCCATTGAAAAGCATATTTCTCATTTCATGCACAAGGTTCCTTTCCCTTCCCCACAAAGGCCACGTATCCTGGTGCAGCTGTCTCCACATGATAGCCTGATGCTGAGCCAGCCTGTTTCCTCTCCGCTCCCTCTGAGTGGCGGACGGCTCTCTACACTGCTGTTGAACCTCGGCCCAAAAAATGCAGCGACTCTTCTGGTGTTGGCTGTGACTGAACATAAGATCCTAGTTCACTCTTTACGCCCAGCTGTTCTTACCAGCGTTACCGAGGCCCTGGTGTCGATGATTTTTCCCTTCCACTGGCCGTGCCCATACATTCCTCTCTGCCCACTGGCCCTGGCAGATGTGCTCAGCGCTCCATGCCCTTTTATTGTAGGGGTGGATTCACGGTACTTTGATCTCTATGAGCCACCAACGGACATAAGCTGTGTGG

Function

symbol description
dennd4a Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of Rab protein signal transduction. Predicted to be active in cytoplasmic vesicle. Orthologous to human DENND4A (DENN domain containing 4A).

NR:

description
PREDICTED: C-myc promoter-binding protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119173 True 1539 TUCP 0.51 9 10245602 10254848

Neighbor

gene id symbol gene type direction distance location
nkpd1 LOC107686002,LOC107556520,LOC107718248 coding downstream 218366 10021961 ~ 10027236 (-)
spoplb spoplb,LOC107551807,LOC108412981,LOC107685952,LOC103032629,LOC108270802,LOC107718234,LOC105911847,LOC107573035 coding downstream 444380 9792043 ~ 9801222 (-)
fam43a fam43a,LOC107715807,LOC107574059,LOC107677513,LOC107685960,LOC107718209,LOC107551800 coding downstream 601885 9641549 ~ 9643717 (-)
zmat3 zmat3,LOC107715805,LOC107685963,LOC107718246,LOC107677493,LOC107581711 coding downstream 723841 9508358 ~ 9521761 (-)
si:dkey-202e22.2 si:dkey-202e22.2,LOC107715802,LOC107574832,LOC107677483,LOC107718205,LOC107686004,LOC107551796 coding downstream 812626 9426276 ~ 9432976 (-)
trnaq-cug_19 NA coding upstream 4347 10259195 ~ 10259266 (-)
LOC122354381 megf11,LOC107596974,LOC107686294,LOC107672222,LOC107583869 coding upstream 11911 10266759 ~ 10305672 (-)
LOC122354188 bhlhe40,LOC107577974,LOC107715793,LOC107659534,LOC107685973,LOC107718198,LOC107573081 coding upstream 63443 10318291 ~ 10322035 (-)
LOC122354392 thsd7bb,LOC107715818,LOC107687750,LOC107685951,LOC107551783,LOC107718236 coding upstream 261011 10515859 ~ 10551041 (-)
LOC122354279 cdkn3 coding upstream 463013 10717861 ~ 10726086 (-)
G80578 NA non-coding downstream 56909 10187557 ~ 10188693 (-)
G80572 NA non-coding downstream 153847 10085314 ~ 10091755 (-)
G80568 NA non-coding downstream 366403 9877857 ~ 9879199 (-)
G80473 NA non-coding downstream 520499 9699451 ~ 9725103 (-)
G80472 NA non-coding downstream 549649 9695715 ~ 9695953 (-)
G80596 itpr1,LOC107581741,LOC107659525,LOC107685975 non-coding upstream 181254 10436102 ~ 10451440 (-)
LOC122354526 NA non-coding upstream 239809 10494657 ~ 10497979 (-)
G80631 NA non-coding upstream 320556 10575404 ~ 10575993 (-)
G80918 NA non-coding upstream 479321 10734169 ~ 10794873 (-)
G80931 NA non-coding upstream 788371 11043219 ~ 11048148 (-)
cntnap5l cntnap5l,LOC107687751,LOC107581667,LOC107685949,LOC107715775,LOC107718238,LOC107572029 other downstream 284478 9895716 ~ 9961124 (-)
thsd7bb NA other downstream 379049 9813622 ~ 9866553 (-)
LOC122353984 NA other downstream 1544845 8696450 ~ 8700757 (-)
LOC122353980 NA other downstream 1577802 8553416 ~ 8667800 (-)
LOC122354573 NA other downstream 1707058 8532773 ~ 8538544 (-)
LOC122354283 mfn2,LOC107710790,LOC107748965,LOC107602467,LOC107698839,LOC107678429,LOC107701405,LOC107552408,LOC107661155,LOC107558363,LOC107706807 other upstream 496349 10751197 ~ 10758842 (-)
LOC122353594 rfc4 other upstream 507643 10762491 ~ 10765837 (-)
LOC122354338 LOC107698785 other upstream 738452 10993300 ~ 10997453 (-)
srsf7b srsf7,LOC107665899,LOC107693014 other upstream 881322 11136170 ~ 11145070 (-)
si:ch73-100l22.3 NA other upstream 996407 11251255 ~ 11261294 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G81045 NA non-coding CI01000013 null 4721963 ~ 4728706 (-)
bowfin (Amia calva) G73872 NA non-coding CM030128.1 CM030128.1 37598728 ~ 37602411 (+)