G81045


Basic Information

Item Value
gene id G81045
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4721963 ~ 4728706 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU92249
AGTTATTACAGTTATCATTCTTGGTGTGCTACAAACACGTCTGAAGCTTAGATGCCTTACCCCAGGTCTGTGAGCGGCGGTTTGTCTCTGCCTCTTCTGTAGCAGAGGTAGATCTGCGGCCCCATGAGACTTCCTCCATTCAGTTCAGCAGAGAGTCCAGAGGGGGTGCATTCAACACAGGTAAACCCTCGAGGTACCTCCTCCCCTAGGGAGCGAATCACCACCGCCACATCAGTGATCGGTGCCTTGAGCTGTGCTGAGCTCCGGTGACCACCATCTTCAGGGTGGACATCTTCATCGAGGGGCTTAGACGAGTCGGTGAGTCCAGCCACAACAAAGTAGTCTGCTACACGAAGGCTTTTCTCCTCCATTTTTGATCATCCCCATAAAACGAGGACTATATGTGCTTTCAGTAGGACGACGATTCAGAGGACACGCTCATTGAAGCACGCACCGTTATTCTGATTATTATTCACAGAGCGGAAGAAGGGACTTATGTATTTCCATTCATTTTCATCAGACAAATAAATTATTCCTCCATCACGTATAAACATTCCCTCTGGGAGGGCTGTGCCTCATCTTCTCTATACGCTTTCAGGGATGCGCTCAGCTCGAGACTCGCGCAAGCGCTTATCAAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU92249 True 640 lncRNA 0.49 2 4721963 4728706

Neighbor

gene id symbol gene type direction distance location
CI01000013_04710817_04715966 RAB11B.1.S, RAB25, RAB11B.2.L, RAB11B.2, RAB11B.1, RAB11A, RAB11B, RAB11BA coding downstream 5767 4710555 ~ 4716196 (-)
CI01000013_04639632_04646082 NA coding downstream 74962 4639362 ~ 4647001 (-)
CI01000013_04561253_04567647 MAP2K1 coding downstream 154316 4560340 ~ 4567647 (-)
CI01000013_04550541_04556315 ZWILCH coding downstream 165648 4550541 ~ 4556315 (-)
CI01000013_04458279_04460146 NA coding downstream 261813 4458085 ~ 4460150 (-)
CI01000013_04760408_04771970 SLC24A1 coding upstream 31686 4760392 ~ 4772789 (-)
CI01000013_04781357_04784880 HACD3 coding upstream 52458 4781164 ~ 4784880 (-)
CI01000013_04824249_04836061 ARIH1 coding upstream 95200 4823906 ~ 4836061 (-)
CI01000013_04843421_04845524 NA coding upstream 114304 4843010 ~ 4845524 (-)
CI01000013_04884419_04897842 ST3GAL2 coding upstream 154591 4883297 ~ 4897842 (-)
G80989 NA non-coding downstream 59310 4583227 ~ 4662653 (-)
G80740 NA non-coding downstream 307817 4413320 ~ 4414146 (-)
CI01000013_04412468_04417725 SMAD6 non-coding downstream 309100 4412200 ~ 4418864 (-)
G80761 NA non-coding downstream 311900 4409807 ~ 4410063 (-)
G81075 NA non-coding upstream 61763 4790469 ~ 4791040 (-)
G81076 NA non-coding upstream 64098 4792804 ~ 4793768 (-)
G81077 NA non-coding upstream 68859 4797565 ~ 4797921 (-)
G81078 NA non-coding upstream 70498 4799204 ~ 4799470 (-)
G81081 NA non-coding upstream 123994 4852700 ~ 4860896 (-)
G80443 NA other downstream 655946 4064942 ~ 4066017 (-)
G80399 NA other downstream 815723 3904067 ~ 3906240 (-)
G80271 NA other downstream 998356 3719433 ~ 3723607 (-)
G80262 NA other downstream 1154426 3565171 ~ 3567537 (-)
G81032 NA other upstream 20103 4748809 ~ 4750561 (-)
G81547 NA other upstream 1010820 5739526 ~ 5744038 (-)
CI01000013_05883498_05884071 CHTF8 other upstream 1153343 5882049 ~ 5884071 (-)
CI01000013_07339918_07367774 NA other upstream 2611003 7339709 ~ 7367774 (-)
CI01000013_09309438_09335834 MICAL3A other upstream 4578330 9307036 ~ 9336077 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G80581 dennd4a,LOC107596978,LOC107686292,LOC107672237,LOC107583773 unknown NC_056709.1 CM032078.1 10245602 ~ 10254848 (-)
mexican tetra (Astyanax mexicanus) G88561 NA non-coding NC_035906.1 CM008309.1 5034539 ~ 5041190 (-)