CI01000013_04710817_04715966 (RAB11B.1.S, RAB25, RAB11B.2.L, RAB11B.2, RAB11B.1, RAB11A, RAB11B, RAB11BA)


Basic Information

Item Value
gene id CI01000013_04710817_04715966
gene name RAB11B.1.S, RAB25, RAB11B.2.L, RAB11B.2, RAB11B.1, RAB11A, RAB11B, RAB11BA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4710555 ~ 4716196 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_04710817_04715966.mRNA
AAATAAAATACAATAAATATTGTAATAAGGCTTTTATTATGACAGTTTGTGAAGGCCCTAACCCGGAACACTTCAGGAGATGCTCACTGGTTCGCCTGCTTGCTAACCTGTTAGCATGGCTACTGCCTAATCACAAATACACTGCAGTGCAGTAGCGGAGAGGACAGGGACGGGTCGGCTCCACTTTTCCTTCACATTCTTCCATTGTTTGCGCTTTTCTTTTAATCGAAATGGGGACGCGAGACGACGAATATGACTACTTGTTTAAAGTGGTCCTGATTGGAGACTCCGGTGTGGGGAAGAGTAACCTGCTGTCTCGTTTCACCCGTAATGAATTCAACCTTGAGAGCAAAAGCACTATCGGAGTGGAGTTTGCGACACGTAGCATTCAGGTGGATGGAAAGACGGTGAAAGCTCAGATCTGGGACACCGCTGGACAGGAACGCTACCGAGCTATCACTTCAGCGTATTACCGAGGAGCTGTGGGGGCCCTCCTAGTGTATGACATCGCCAAGCACCTGACCTATGAGAATGTGGAGCGTTGGCTTAAGGAGCTCCGAGACCATGCAGACAGCAACATTGTCATCATGCTCGTGGGCAATAAAAGCGACTTGCGTCACCTTCGGGCCGTGCCCACCGATGAAGCACGTGCATTTGCAGAGAAAAACGGTCTGTCCTTCCTAGAGACCTCAGCTTTGGATTCCACCAATGTAGAGACCGCTTTCCAGACCATCCTGACTGAAATCTATCGGATCGTATCCCAAAAGCAGATGTCTGACCGCCGAGACAATGACATGTCACCTAGCAACAATGTGGTGTCCATCCAGGCCAATGGAAGAGGCCTTAAGGCACATGGCTACTGCGCTGTTTTCTCTTCGCCATCACGTGCTTCATTTGCATCGAGGCACAAGTTCTCTTTGAAACACTACCACAAACCGATTCAGTATGAAATGAGGGAACGGACTTCCCCTAAACGTAACATTATCCTATCACCACAACCTCAAACCCATTGTACTTTTGCAGGTCACACTCTGTCGTTAAAGTTGGAACAGGAAAAACACGCAGCAGTGAATGGCGGCCAGCCGACGGCCGCATCACATGAGAGCACTCTAGGGAACAGACTGGATACTTTCTCTTTCTTTTTATTGCACTGAATGTAAAATATCTCCCGCCACTACAGTTAATGATCTTAAGACCTGTAACTTGTATTTATTCTGTGGTAGTCACTTGAATCGAGTCGTTAGCCTTTAATCTTCGTGGCGAAGTGATGGGACTCTTAAGCGTTAAGACACAGTGTGATAATTTATGAATGTATTATGTGTTTTAGCCTACAAAAAGTCTTTGTCCTGATTCCAGCAGATGAGGAAACTACCACAAGCTGTGATGCTCGTCTTCGCTTAATGGCTGTCTAATAAA

Function

symbol description
rab11a Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within Kupffer's vesicle development; angiogenesis; and melanosome transport. Located in recycling endosome. Is expressed in several structures, including blastodisc; brain; caudal vein plexus; digestive system; and pronephric duct. Orthologous to human RAB11A (RAB11A, member RAS oncogene family).
rab11ba Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in constitutive secretory pathway and regulated exocytosis. Predicted to be active in recycling endosome. Is expressed in several structures, including caudal vein plexus; gut; nervous system; pectoral fin bud; and pronephric duct. Orthologous to human RAB11B (RAB11B, member RAS oncogene family).
rab25 Enables myosin V binding activity. Involved in several processes, including positive regulation of cell population proliferation; positive regulation of epithelial cell migration; and pseudopodium organization. Located in cytoplasmic vesicle and pseudopodium.
rab11b Enables GTPase activity; guanyl ribonucleotide binding activity; and myosin V binding activity. Involved in several processes, including amyloid-beta clearance by transcytosis; cellular response to acidic pH; and constitutive secretory pathway. Located in phagocytic vesicle.

GO:

id name namespace
GO:0035773 insulin secretion involved in cellular response to glucose stimulus biological_process

KEGG:

id description
K07905 RAB11B; Ras-related protein Rab-11B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_04710817_04715966.mRNA True 1416 mRNA 0.47 7 4710555 4716196

Neighbor

gene id symbol gene type direction distance location
CI01000013_04639632_04646082 NA coding downstream 63554 4639362 ~ 4647001 (-)
CI01000013_04561253_04567647 MAP2K1 coding downstream 142908 4560340 ~ 4567647 (-)
CI01000013_04550541_04556315 ZWILCH coding downstream 154240 4550541 ~ 4556315 (-)
CI01000013_04458279_04460146 NA coding downstream 250405 4458085 ~ 4460150 (-)
CI01000013_04438907_04455220 NA coding downstream 255032 4438635 ~ 4455523 (-)
CI01000013_04760408_04771970 SLC24A1 coding upstream 44196 4760392 ~ 4772789 (-)
CI01000013_04781357_04784880 HACD3 coding upstream 64968 4781164 ~ 4784880 (-)
CI01000013_04824249_04836061 ARIH1 coding upstream 107710 4823906 ~ 4836061 (-)
CI01000013_04843421_04845524 NA coding upstream 126814 4843010 ~ 4845524 (-)
CI01000013_04884419_04897842 ST3GAL2 coding upstream 167101 4883297 ~ 4897842 (-)
G80989 NA non-coding downstream 47902 4583227 ~ 4662653 (-)
G80740 NA non-coding downstream 296409 4413320 ~ 4414146 (-)
CI01000013_04412468_04417725 SMAD6 non-coding downstream 297692 4412200 ~ 4418864 (-)
G80761 NA non-coding downstream 300492 4409807 ~ 4410063 (-)
G81045 NA non-coding upstream 5767 4721963 ~ 4728706 (-)
G81075 NA non-coding upstream 74273 4790469 ~ 4791040 (-)
G81076 NA non-coding upstream 76608 4792804 ~ 4793768 (-)
G81077 NA non-coding upstream 81369 4797565 ~ 4797921 (-)
G81078 NA non-coding upstream 83008 4799204 ~ 4799470 (-)
G80443 NA other downstream 644538 4064942 ~ 4066017 (-)
G80399 NA other downstream 804315 3904067 ~ 3906240 (-)
G80271 NA other downstream 986948 3719433 ~ 3723607 (-)
G80262 NA other downstream 1143018 3565171 ~ 3567537 (-)
G81032 NA other upstream 32613 4748809 ~ 4750561 (-)
G81547 NA other upstream 1023330 5739526 ~ 5744038 (-)
CI01000013_05883498_05884071 CHTF8 other upstream 1165853 5882049 ~ 5884071 (-)
CI01000013_07339918_07367774 NA other upstream 2623513 7339709 ~ 7367774 (-)
CI01000013_09309438_09335834 MICAL3A other upstream 4590840 9307036 ~ 9336077 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012755 rab11a coding NC_007129.7 CM002902.2 19131773 ~ 19139152 (+)