CI01000013_04412468_04417725 (SMAD6)


Basic Information

Item Value
gene id CI01000013_04412468_04417725
gene name SMAD6
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4412200 ~ 4418864 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_04412468_04417725.mRNA
ACAGCACTTCTGCGTTAGACCGCCATGTTTCATTTTTGCATCTCATGGATTTAGGTATAAGTTCGAATTCAGCCCTCATTAGGCTGCATAGCTAGAAGCATGTCTTCCTGTATCTTTTCCAAGCTACTGAGTTCACATAGATTCTTTGTGGAGAAAAATCTGGAGAATTATTATGATTTAGTCACAATATTCCCCATGGCGTGTTTTTGGATGTAAAGGCCAGTGCAATGGTTTCATTAAACCATTCAGGCAGAAAAACCACCTTGCAAGCTCAAAGGATGTAAGGAATTCTGTAATTTTAACACATAGGGGCCCAGTGCAAGGGGCCATTTCAGTAAAGAGTGTGTGTAAAGAGAAGTCAGTCCTGATTCCACATATCCAAACAGTTATGCTTGAATCGGCAGCAGTTCTCATACATTTAATTTGTAGGTTTGCTCACTGTATGCATGTGTGTGTGCTTACATTGTTTGACGTATTTGATTTATGGGTCAATTATTGGTCCTCTACTACATCAGATCTTGGCACTGGTTAAAGGGATAGTTTACCCAACAATAAACATTCTCTCATTTATTCACCTTTATGTAGTTTCAAATTCATATGCTGTTATGTTGTTTTTCAACAGAACACAAAATGAGAGTTCTGAAGGTAAGTCTTTAAATTGGAGTCAAGAACCCTAGGGTTCTATAGAACCTTTTTTTCTAAGAGTGTAGTTTTATGATTTTTTTTGTGTGTGTGTTTGATGTCCTTTTTGGAACATGACAGCCTTGGTCGCTGTAAAATGTCGCATAAAGATTCTTAAACTTGCAGCACACGGATTTGGAAAGACATGAGTGAACTATTCCTTTAATGACCTGGGCATTTGTTCGCCCCTGGGAGTCACAGCAAGTGAATGAAAAGGAACCATAGACCTGGCCCTTAAAATCTCCCTGCCAATAGCCTCTCGGGAGCAAAATAATAGCATCACTCAATGTGCAAGTTAATCTGAGCTGATAGTGTGAAGCCTGAGGGGTCAGGAGGTCACAGACTTGCTCTAAGTTGTCAGGGAGCTGAAAGCTGTCCCCAGGCCCACAGCGTGAGCTGGCAGGGAGGAGACGCTCCCTTTCCATCCAAGCCATCACCACCATCACCCACCCACAGGAATGTGGAAGAGAATAGAGACGGGGGAGGGAGTTGTTGCCGGATATGAGCTCACAGCTTTTCCAAATACCCCATCCCCACAAATACTTTCTCCCCGGATCAAGAAAGAGCGCGCAGAAATATACACAATGCCTGCCGCGTGGAAGCGTTTAAGTGTGTGTGTGGCTGAGATAGACACGTATTCAGGGAGTTATGCCAGTCTGTCACCTGATGCCCCCAAGCAGAGTCATTGGTGTAACGTGGCGTACTGGGAGCATCGAACGCGGGTGGGCCGCCTCTATACGGTGTACCAGCCAGCTGTCAGCATTTTCTATGACCTACCTCAAGGCACGGGTTTCTGCCTCGGCCAGCTGAGCCTGGACCAGCGCAGCAGCACCGTGCAACGGACGCGCGGCAAGATCGGATACGGCTTGCTCCTCAGCAAAGAGCCGGACGGAGTCTGGGCCTACAACCGCAGCCAGCACCCCATATTTGTCAACTCGCCTACCCTGGACGTACCGGGGAGCCGTAGCTTGGTGGTGCGCAAGGTGATGCCTGGTTACTCCATCAAAGTGTTCGACTACGAACGCTCATCCATGCTCAGGCAGGGGGCCGAATCCGAGCTGCTAGATGGACCGTATGACCCGAACAGTGTGCGCATCAGCTTTGCGAAGGGCTGGGGCCCTTGTTACTCCCCTCCTAGCCGACTAGCCTCCACAGCGCCCATGCCCCGTGCCGAGTTCAAACAGCCCAGAGGAGTGGCTCCTCTAACTGCAACTGGGGGCCATTATCCTGCTCTTTTGTGTCTGCTTTATGGGAAGAGGGCCCGGATCACCACTCGGGGAGGAACTGGCAGACTATTATACTGGGCAGGGCTAGAGCCTGAGACACATAGTACGCAGATTACACAAGGCACCTCAGCGGGTACAAAAGGGGGCCTAATTAGACCAGGCCTGGGTGAGGTCCAGAGAAATAGCGAGAGAGAGAGCTACCAGGCCTGGGAACGCGCCCTGCTCCTCAGCGACTCCAGCGCAGAGTGAGTAAGAGAGGGACGGATGGGGGAGAAAGAAAAGGAGGAGGAGAAACGGAAAAGCCATGTAAGCAGCTTTGCGAGTGTGCCGCTACCTCAGGGATGGTATTGATTAACAGGGTTTCAGAGCGCTCTCGCTGCCAAAGATGTCTTAAGCTGCTATGAGCTGGTGAGGGCCAGCAAGCACGCCATTTTGTTTGCCCTGTTAATGTACAGTTCAGTGGCCTTTGTGCCTTGCAAAAAAATCAACTTTTTTTTCTCATGTCTCTCAAATTAAA
>TU91919
CAACACTGGAGGTATTGCAAAAGCGGCTTTGCCATCTCACACAGAGAGCAAAGCATTTTCTCCCTACACGCTGTCTGCCGCCAGCCCCGTGCCGAGTTCAAACAGCCCAGAGGAGTGGCTCCTCTAACTGCAACTGGGGGCCATTATCCTGCTCTTTTGTGTCTGCTTTATGGGAAGAGGGCCCGGATCACCACTCGGGGAGGAACTGGCAGACTATTATACTGGGCAGGGCTAGAGCCTGAGACACATAGTACGCAGATTACACAAGGCACCTCAGCGGGTACAAAAGGGGGCCTAATTAGACCAGGCCTGGGTGAGGTCCAGAGAAATAGCGAGAGAGAGAGCTACCAGGCCTGGGAACGCGCCCTGCTCCTCAGCGACTCCAGCGCAGAGTGAGTAAGAGAGGGACGGATGGGGGAGAAAGAAAAGGAGGAGGAGAAACGGAAAAGCCATGTAAGCAGCTTTGCGAGTGTGCCGCTACCTCAGGGATGGTATTG

Function

symbol description
smad6 Enables several functions, including SMAD binding activity; signaling receptor binding activity; and transcription regulator inhibitor activity. Involved in several processes, including negative regulation of osteoblast differentiation; negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway; and zygotic specification of dorsal/ventral axis. Located in Golgi apparatus; cytosol; and nuclear body. Part of protein-containing complex. Implicated in aortic valve disease 2; craniosynostosis; and radioulnar synostosis.

GO: NA

KEGG:

id description
K04677 SMAD6; mothers against decapentaplegic homolog 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_04412468_04417725.mRNA False 2424 mRNA 0.49 4 4412200 4418864
TU91919 True 497 lncRNA 0.56 1 4412367 4412863

Neighbor

gene id symbol gene type direction distance location
CI01000013_04368048_04369323 SMAD3 coding downstream 42838 4366932 ~ 4369362 (-)
CI01000013_04350678_04363643 SMAD3B, SMAD3 coding downstream 48511 4349830 ~ 4363689 (-)
CI01000013_04322711_04343979 IQCH coding downstream 68221 4322571 ~ 4343979 (-)
CI01000013_04311625_04312179 CUNH15ORF61, C4H15ORF61 coding downstream 99783 4311420 ~ 4312417 (-)
CI01000013_04241966_04247231 SKOR1B coding downstream 164656 4241911 ~ 4247544 (-)
CI01000013_04438907_04455220 NA coding upstream 19771 4438635 ~ 4455523 (-)
CI01000013_04458279_04460146 NA coding upstream 39221 4458085 ~ 4460150 (-)
CI01000013_04550541_04556315 ZWILCH coding upstream 131677 4550541 ~ 4556315 (-)
CI01000013_04561253_04567647 MAP2K1 coding upstream 141843 4560340 ~ 4567647 (-)
CI01000013_04639632_04646082 NA coding upstream 220498 4639362 ~ 4647001 (-)
G80761 NA non-coding downstream 2137 4409807 ~ 4410063 (-)
G80748 NA non-coding downstream 13681 4398294 ~ 4398519 (-)
G80743 NA non-coding downstream 33932 4378051 ~ 4378268 (-)
G80677 NA non-coding downstream 172224 4239666 ~ 4239976 (-)
G80674 NA non-coding downstream 197921 4213950 ~ 4214279 (-)
G80989 NA non-coding upstream 164363 4583227 ~ 4662653 (-)
G81045 NA non-coding upstream 303099 4721963 ~ 4728706 (-)
G81075 NA non-coding upstream 371605 4790469 ~ 4791040 (-)
G81076 NA non-coding upstream 373940 4792804 ~ 4793768 (-)
G80443 NA other downstream 346183 4064942 ~ 4066017 (-)
G80399 NA other downstream 505960 3904067 ~ 3906240 (-)
G80271 NA other downstream 688593 3719433 ~ 3723607 (-)
G80262 NA other downstream 844663 3565171 ~ 3567537 (-)
G79690 NA other downstream 1596808 2813247 ~ 2815392 (-)
G81032 NA other upstream 329945 4748809 ~ 4750561 (-)
G81547 NA other upstream 1320662 5739526 ~ 5744038 (-)
CI01000013_05883498_05884071 CHTF8 other upstream 1463185 5882049 ~ 5884071 (-)
CI01000013_07339918_07367774 NA other upstream 2920845 7339709 ~ 7367774 (-)
G80740 NA non-coding upstream 457 4413320 ~ 4414146 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G124516 NA non-coding NC_056716.1 CM032085.1 4631627 ~ 4631950 (-)
mexican tetra (Astyanax mexicanus) LOC103038817 LOC103038817 misc NC_035911.1 CM008314.1 29274161 ~ 29280692 (-)