CI01000013_04322711_04343979 (IQCH)


Basic Information

Item Value
gene id CI01000013_04322711_04343979
gene name IQCH
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4322571 ~ 4343979 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_04322711_04343979.mRNA
ATGGCCGACGTCCTTAAAAATAAGGATGAAGTTGGGCATATTTTAGTACAGGTGCAGGATGATTTGAGACAACTAAAAAAGAATCTTGTTAGATTGACTGTGCAACAGAACGGGGAAGTTTTGGACATTCAAGCTCTGGATACAGCCATCAGCAGGACAGAAAATGGAATAAGGCACAAGTCAGCATTTATCACGTGTCTCCTCAACAACCCTTTTCACCCAAAGAACAAGGAGCTTATGCAACAAAATTATGGCATTCAGTTTCCTCACCTGCACAAGAGAAACGAGGCTAGCCTGTCTCAGGACAGGCACTGGTACCTGTTCCCGCATGCCAATAAGACAGCCGTGGCTTACCCAACTGGCACTCGCTGGCGCTCTGCCTGCTGCGTCAATATCTCTATGCTGTCGGCTAGTTCTCTGCTGAGTCTCCAAAGGAGCTCCCACTGTTGTCCCCTTGTACCACTTAAACAGCTGCGAGCCTCAAAACCACTCCAAACACCTGGCTGGTGCTCGTGGTTTGTCAGGGAGCTCAGTGGTGTGACAACAGGCAGGCCAGAGAACATCAGGGGGAGAATCCAGAACAGCAGGATGAGGAGAGTACAGAAGGGCTCTGTCTGGCATGTTGGGACTCAAAGAGTGGTCACTGGCCCCGCTTTAGGAAATTTCGCCACAACACATGGAGGGCTGCAACCCTCAGCAGCTGACCTCTCTTCAGTGCAAACTCCACCACAGCCCAAAGCTGTCCATGTGCTCCAGAGACAGGACAGTGGCCAAAATGAGTCAGAAAAGGCTTGTAAAAGGGAGATGGATGTTAGCAGAGACGGAATGGCTCTTGGAAGATCATCAACCGAGAGTCCAACATCCAGGACCATGCGCACTCCCCCTCCTTCTGCTGCTTCTGCAAGCTCTGACAACAGAGTACTGACTCGTGGGTTAGCCCGACTCACCCCACTTAACCTGCAGAGCATTCCTGTGCCAGCTGCTGTCAGCAAATATCCTTTCACCATAGTTGAGGGGCAGATTGACCCTGATGCTCCTGACTACTGTAGGTTTAAAAAGCAGTACTGTCTGTGCTGGGGTGCAATTGTGGAGGCTCTGGACCAGCTGCAGCGGATGCTACTGGACTTTGCGGTGCCATTGGCGCGGGTGTGCGGGGAGAGGCTGGCAGCTTGTGTCCAGAGCAGTGAGCTCGACTGGAGAGGCAGCAGGGGCTGGTGCACCCATGTGGAGAAGCTGCTGTCGGTGCTGGAGAACAGGGATGAGGTATGGGATCTTATGTGTCAGCCCGGCCAGCGCTACAAAGGCAACGGGGGGCATCAGGCAGCGGCTGTGTGTATCCAGACCTGCTGGAGGCGTTACTCTGCCCATACCGCCTACCTGCTCCAACTCAGGCCCAAATGGGCGGCACAAATTATTGCCATGTCTCTGCTGAAACGTGCCAAACTGGGCCATTTAAAGAAAAGTCTGCAGGCCTCACGTCTCCGCCAACTGGAAAACTACCGCATCCGGGCAGAGAGTCTGGCAGCCAACTGGAAACACATCACCTCCACCAAAAGGACTATCATTCACATCCCATCATTGGGTAATTTCTTTGCATCTGTTATGATCGCTCCTGGATATTCCCAACACCAGCGACTCAGTCTCAGGGGATTTGATGTACTTCAGAATACCCAGATGGGGCGACTATGTGACATCAGAGATGAGAACGTCGAAGTCATCTATGTGTCTCCGGTGTGCCTGGGAGAGGATGTTCTCCAGTACTACACTCACCTGCTTGGCCTGCAGACAGCCATTGAGCTGGGTGACGCTTCTGTGCCTGAGTCCAACTGTGCCAAACGCTTCACCATCCTCATGCCAGAAGCAATGGAGTATTTTTCAACCCGAAACATGTGTTTAGCTTCACTCCTGAAGTACAGCCCACGAACACTAAAGCGCATCAAGAATTTGATCCAGGGGAAGCAAGCCTACATGGTCGGCGGTGTCACCCACATTGATGACCTGGCTGTGGCAGATGAGCTGGAAGTTCCTCTTCTGGGCACAGAGCCTGCGGTCGCCCAGCTATATGGCACTAAATCTGGAGGGAGAAGGATCTTCAGTGGTGCAGGAGTCGATATGCCTCCGGGAAAGTGGGATATATACACCCTGGAGCAGCTTTATGAAGGTCTGGCCCAGTTGATGACAGAACACATGGAAGTCCAGCGATGGCTATTCAAGATAGATAGCGAAGTGGGTGGAAGGGGAATGGCTTATTGTGACGTCTGCTACCTAAAATGCCACCAATGGGCACAGCAGGAGTTCAGCCGCCATGGGCCTAAACAGTGGAGAACATCACTGCCTCAAGAGGCCACGTGTCCAACCTCCAAGCTATTAGCTCAGTCCCTAATTCACACTGAGGCCGAGAGAGGAATCTGGGGCTGTAATTGTGGTGGCATTGGCGCTGTTAATTACAGAGTGCATTGGCAAATTCTCAGAGCGCGCCTGCTCTTTCGCGGGGAACGAAGGCCGTTTCCTTACACTTTTTGCCGCACCATTGTGTGCTTTATGGCTTGTGTCGGGGGTGAAATCACTGCGCAGCGATTGACCCTGGCTCTTCTGGAGTCGGTGATGACCAAGTTCTTAGAGGAAGTTCCTCATCTTCTGGCATCCTATGCCCGTCCGGCCAACACATCCTGCTATTCCACATGGACCTGTTTCTTAGAACACTTCCTCAGGGAAGGTGGAGTGATAGAAGCCTTTCCTCCTTCGGATAGTGTGACATGTCTGACGGTGGATCTTCTTGTGGAGCCGGGTGGAGATGTACACATGCTGTCCTGTGGAGATCAACTGCGTGGGCCCAGTGGGTTGGAAGTGGTGGGCTGCACTGTACCCCAGTCCTCCATCTGCCCTGATGTCCTGCACTCCATCTGTAATCATATAGGTCAGGCCTGTCAGAAGCGCTCCATCATGGGCCACCTTTCCCTTGATCTAGTCACCTTTCTGGATCCCAGCAACCTGGAGCAGCAGCTCTATGAAAACAGAACCTGCCATGTTAAGAAGCTGTTGAAAATGATATGGGATCTGACACGTGGCACTGTTCTGTCAGAGCCCGTAACACTGTTCTCACCTTAGAATATAGATAGTGTGAGGGTTCAATCGCCTGACCCGGGGCTCTTATTGAGATATTATAAGATCACTCCTAGGTTCCCCTTAGGAGCTGTACAGATGAGACAATGACGGGTGGCTAATGTGCCAAAAGGCTATCTAATAAA

Function

symbol description
iqch Orthologous to human IQCH (IQ motif containing H).

NR:

description
Si:dkey-246a16.2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_04322711_04343979.mRNA True 3248 mRNA 0.52 18 4322571 4343979

Neighbor

gene id symbol gene type direction distance location
CI01000013_04311625_04312179 CUNH15ORF61, C4H15ORF61 coding downstream 10154 4311420 ~ 4312417 (-)
CI01000013_04241966_04247231 SKOR1B coding downstream 75027 4241911 ~ 4247544 (-)
CI01000013_04219612_04232778 PIAS1, PIAS1B coding downstream 89420 4219586 ~ 4233151 (-)
CI01000013_04215370_04216413 RXFP3.3A3 coding downstream 105979 4214961 ~ 4216592 (-)
CI01000013_04206025_04212137 MORF4L1B, MORF4L1 coding downstream 110434 4205721 ~ 4212137 (-)
CI01000013_04350678_04363643 SMAD3B, SMAD3 coding upstream 5851 4349830 ~ 4363689 (-)
CI01000013_04368048_04369323 SMAD3 coding upstream 22953 4366932 ~ 4369362 (-)
CI01000013_04412468_04417725 SMAD6 coding upstream 68221 4412200 ~ 4418864 (-)
CI01000013_04438907_04455220 NA coding upstream 94656 4438635 ~ 4455523 (-)
CI01000013_04458279_04460146 NA coding upstream 114106 4458085 ~ 4460150 (-)
G80677 NA non-coding downstream 82595 4239666 ~ 4239976 (-)
G80674 NA non-coding downstream 108292 4213950 ~ 4214279 (-)
G80671 NA non-coding downstream 135295 4186666 ~ 4187276 (-)
G80669 NA non-coding downstream 140322 4181792 ~ 4182249 (-)
G80652 NA non-coding downstream 163841 4158390 ~ 4158730 (-)
G80743 NA non-coding upstream 34072 4378051 ~ 4378268 (-)
G80748 NA non-coding upstream 54315 4398294 ~ 4398519 (-)
G80761 NA non-coding upstream 65828 4409807 ~ 4410063 (-)
G80740 NA non-coding upstream 69341 4413320 ~ 4414146 (-)
G80443 NA other downstream 256554 4064942 ~ 4066017 (-)
G80399 NA other downstream 416331 3904067 ~ 3906240 (-)
G80271 NA other downstream 598964 3719433 ~ 3723607 (-)
G80262 NA other downstream 755034 3565171 ~ 3567537 (-)
G79690 NA other downstream 1507179 2813247 ~ 2815392 (-)
CI01000013_04561253_04567647 MAP2K1 other upstream 212889 4560340 ~ 4567647 (-)
G81032 NA other upstream 404830 4748809 ~ 4750561 (-)
G81547 NA other upstream 1395547 5739526 ~ 5744038 (-)
CI01000013_05883498_05884071 CHTF8 other upstream 1538070 5882049 ~ 5884071 (-)
CI01000013_07339918_07367774 NA other upstream 2995730 7339709 ~ 7367774 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location