LOC122353594 (rfc4)


Basic Information

Item Value
gene id LOC122353594
gene name rfc4
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 10762491 ~ 10765837 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU119703
tgtgtgtgtgtccaggccGGAGCTGTACCGTCAGAGAGTTCTGGAGCTGAACGCGTCCGATGAGCGAGGGATTCAGGTGATCCGAGAGAAGGTGAAGAGGTTCGCTCAGCTGACGGCGGCTGGGACGCGCTCCGAGTGAGTGGCCGTGTTCTCCGAGCCCCGAGCGCCTCCAAACACGTGCGTGAACGTCTCTGTGTGTCCGCAGCGGGAAGCCCTGTCCTCCGTTTAAGATCATCATCCTGGACGAGGCGGACTCGATGACCGGAGCGGCTCAGGCGGCTCTCAGGAGGACCATGGAGAAGGAGTCTCGGACCACGCGCTTCTGTCTCATCTGTAACTACGTGAGCCGGTCAGTGTGAGCGCCGCTATCCCACCATGCCCTGCTGCCGCTCAGGCTGACTGCCGCTGTTTGTACAGGATCATCGAGCCGCTGACCTCCAGATGCTCCAAGTTCCGCTTCAAACCGCTGGCCAACGACATTCAGAAGGAGCGTCTGCTGGACATCTGTGCCAAAGAGAAGCTCAAGTACAGCAAAGAGGGCATCGAGGCTCTGGTGAGGGTCTCAGAGGGAGATCTCAGGAAAGCCATCACGTATCTCCAGAGCGCTTCCAGACTCACCACGGAGCAGGAGATCACGGAGCAGGTCATCATCGAGATCGCCGGGGTGGTTCCTCCGAAAGTGATCGAGGCTCTCCTCCAGATCTGCTCCAGAGGAACGTTTGAGAAGCTGGAGCTCGCTGTGAAGGTCAGTGTCGGCTTCGCTCTGCGTCTGTCCGTGCTTCTGCTTCCGCTCTGATTCACGCTCTGTGCAGGACGCCATCGATCAGGGCTACGCCGCCACCAACGTCCTCAACCAGCTACACGACGTCGTCATCGACGAGAAGCTGAGCGACAGGCAGAAGTCCGTCATCACCGAGAAGATGGCCgaggtGGATAAGTGTCTGGCGGACGGTGCAGACGAGTATCTTCAGTTACTGAGTCTCTGCTCGGTCATCATGCAGCAGGCCACACACAACACCTGAGCGACCAATCAGCTGCTCCGATGCCCCtcagctgaccaatcagcacTGCCGCTGATTCCACACACAGCTGCTTGGGCTGCTTTCAAGTTTTTGTACATGTAAagtttgtaattaaaaacagg
>XM_043251406.1
gtttgtgtttttgacagGAGGAGAAATGCAGGCGTTTTTGAAAGGATCTTCATCACAGAGTGTTAAAGCTCAGAAACCAccttcatcttcttcatcttcatcatcatcaggaGAGAAGAAGCAGAAGGCCTTGCCCTGGGTGGAGAAATAcCGGCCGAAGTGTGTGGATGAAGTGGCCTTCCAGGAGGAGGTGGTGGCCGTCCTGAAGAAGTCTCTGGAGGGCGCTGATTGTCTCCCAAACCTGCTCTTCTACGGCCCTCCAGGAACCGGAAAGACCTCCACCATCCTAGCAGCCGCCAGAGAGCTTTATGGgccGGAGCTGTACCGTCAGAGAGTTCTGGAGCTGAACGCGTCCGATGAGCGAGGGATTCAGGTGATCCGAGAGAAGGTGAAGAGGTTCGCTCAGCTGACGGCGGCTGGGACGCGCTCCGACGGGAAGCCCTGTCCTCCGTTTAAGATCATCATCCTGGACGAGGCGGACTCGATGACCGGAGCGGCTCAGGCGGCTCTCAGGAGGACCATGGAGAAGGAGTCTCGGACCACGCGCTTCTGTCTCATCTGTAACTACGTGAGCCGGATCATCGAGCCGCTGACCTCCAGATGCTCCAAGTTCCGCTTCAAACCGCTGGCCAACGACATTCAGAAGGAGCGTCTGCTGGACATCTGTGCCAAAGAGAAGCTCAAGTACAGCAAAGAGGGCATCGAGGCTCTGGTGAGGGTCTCAGAGGGAGATCTCAGGAAAGCCATCACGTATCTCCAGAGCGCTTCCAGACTCACCACGGAGCAGGAGATCACGGAGCAGGTCATCATCGAGATCGCCGGGGTGGTTCCTCCGAAAGTGATCGAGGCTCTCCTCCAGATCTGCTCCAGAGGAACGTTTGAGAAGCTGGAGCTCGCTGTGAAGGACGCCATCGATCAGGGCTACGCCGCCACCAACGTCCTCAACCAGCTACACGACGTCGTCATCGACGAGAAGCTGAGCGACAGGCAGAAGTCCGTCATCACCGAGAAGATGGCCgaggtGGATAAGTGTCTGGCGGACGGTGCAGACGAGTATCTTCAGTTACTGAGTCTCTGCTCGGTCATCATGCAGCAGGCCACACACAACACCTGAGCGACCAATCAGCTGCTCCGATGCCCCtcagctgaccaatcagcacTGCCGCTGATTCCACACACAGCTGCTTGGGCTGCTTTCAAGTTTTTGTACATGTAAagtttgtaattaaaaacaggTCTTTCTAA

Function

symbol description
rfc4 Predicted to enable ATP binding activity and DNA binding activity. Predicted to contribute to DNA clamp loader activity. Acts upstream of or within retina development in camera-type eye. Predicted to be part of DNA replication factor C complex. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; immature eye; and nervous system. Orthologous to human RFC4 (replication factor C subunit 4).

NR:

description
PREDICTED: replication factor C subunit 4

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10755 RFC2_4; replication factor C subunit 2/4

RNA

RNA id representative length rna type GC content exon number start site end site
TU119703 False 1144 TUCP 0.58 4 10762500 10764149
XM_043251406.1 True 1245 mRNA 0.56 10 10762491 10765837

Neighbor

gene id symbol gene type direction distance location
LOC122354393 sos1,LOC107705364,LOC107654947,LOC107602966 coding downstream 11960 10734744 ~ 10750531 (-)
LOC122354279 cdkn3 coding downstream 36405 10717861 ~ 10726086 (-)
LOC122354392 thsd7bb,LOC107715818,LOC107687750,LOC107685951,LOC107551783,LOC107718236 coding downstream 211450 10515859 ~ 10551041 (-)
LOC122354188 bhlhe40,LOC107577974,LOC107715793,LOC107659534,LOC107685973,LOC107718198,LOC107573081 coding downstream 440456 10318291 ~ 10322035 (-)
LOC122354381 megf11,LOC107596974,LOC107686294,LOC107672222,LOC107583869 coding downstream 456819 10266759 ~ 10305672 (-)
il1rapl1b il1rapl1,LOC107756873,LOC107677935,LOC107698784 coding upstream 15298 10781135 ~ 10926318 (-)
filip1l filip1l,LOC107747907,LOC107698788,LOC107756872,LOC107677934,LOC107562488,LOC107574218 coding upstream 231877 10997714 ~ 11034812 (-)
zgc:158270 atl2,LOC107562495,LOC107749625,LOC108441890 coding upstream 315737 11081574 ~ 11094089 (-)
LOC122354292 hnrnpll,LOC106564787 coding upstream 332696 11098533 ~ 11125023 (-)
sos1 sos1,LOC106564790 coding upstream 382903 11148740 ~ 11182772 (-)
G80631 NA non-coding downstream 186498 10575404 ~ 10575993 (-)
LOC122354526 NA non-coding downstream 264512 10494657 ~ 10497979 (-)
G80596 itpr1,LOC107581741,LOC107659525,LOC107685975 non-coding downstream 311051 10436102 ~ 10451440 (-)
G80578 NA non-coding downstream 573798 10187557 ~ 10188693 (-)
G80572 NA non-coding downstream 670736 10085314 ~ 10091755 (-)
G80931 NA non-coding upstream 277382 11043219 ~ 11048148 (-)
LOC122354511 NA non-coding upstream 362477 11128314 ~ 11130313 (-)
G80952 NA non-coding upstream 403439 11169276 ~ 11188207 (-)
G80980 NA non-coding upstream 432775 11198612 ~ 11201668 (-)
G80981 NA non-coding upstream 436221 11202058 ~ 11203144 (-)
LOC122354283 mfn2,LOC107710790,LOC107748965,LOC107602467,LOC107698839,LOC107678429,LOC107701405,LOC107552408,LOC107661155,LOC107558363,LOC107706807 other downstream 3649 10751197 ~ 10758842 (-)
G80581 dennd4a,LOC107596978,LOC107686292,LOC107672237,LOC107583773 other downstream 507643 10245602 ~ 10254848 (-)
cntnap5l cntnap5l,LOC107687751,LOC107581667,LOC107685949,LOC107715775,LOC107718238,LOC107572029 other downstream 801367 9895716 ~ 9961124 (-)
thsd7bb NA other downstream 895938 9813622 ~ 9866553 (-)
LOC122353984 NA other downstream 2061734 8696450 ~ 8700757 (-)
LOC122354338 LOC107698785 other upstream 227463 10993300 ~ 10997453 (-)
srsf7b srsf7,LOC107665899,LOC107693014 other upstream 370333 11136170 ~ 11145070 (-)
si:ch73-100l22.3 NA other upstream 485418 11251255 ~ 11261294 (-)
mafgb mafgb,mafg,mafga,LOC107564557,LOC107702026,LOC107657334,LOC108437166,LOC106533856,LOC107739593,LOC103140971,LOC106920092,LOC107376449 other upstream 497495 11263332 ~ 11286218 (-)
LOC122354635 NA other upstream 624755 11390592 ~ 11394876 (-)

Expression


Co-expression Network