G80509


Basic Information

Item Value
gene id G80509
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 10321670 ~ 10322338 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU119073
CTTGCATGTCAGAGATATCCAGCGAGGCGTGTTTGGCCATACACGGAGGAGGCTGAGCACTGGTAATCCTTTCCATTTTACCCTATTAATATATCTTACTGATGTATGAATAGGgtagatttatttttccaaaaaaaaaaaaaaaattatatatacgtatatataaaaataaaaagcagatccGTTACTCTCTCATAAAAGTCCACGTGTATTTTCCTCGAATAAAGTAGTTTTGGTTCCAGATAGGGTGTCTCAAAACTAGGACGCAGAAGTGATGTTGTTGTGAGGTGGAGATGCAGGAGGCGTTCGTCGGCTCCGGTGCTGGTTAAATGAGTGTATGTGGGTGGATTTGAAGTACGTGTTAAATAAACCCTGTGACTGCAGACACGTCTCGAGCTCCAGTCACATGAGCCTCACGTGTGTGACGGCGCTTTCAGAGCTCAACCCATTTACAGCAGACCGCCCGCCTTCCCGTGTCCCGTGTACCACCATGctgcctccctctctctctctctctctctctctctctctctctcggcgcACGATAACAGCTCGTCTCAGGGACGTGTGTTATGAGCGCCTTATCCTGGATTGACTTCAAAGCATATGATATAGATGCAGACAAAGCGTTCAGAGTATTTTAT

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU119073 True 644 lncRNA 0.45 2 10321670 10322338

Neighbor

gene id symbol gene type direction distance location
rab11a rab11a,LOC105007892,LOC106591986,LOC100698633,LOC106588008,LOC103378951,LOC106562755 coding upstream 55985 10259698 ~ 10265685 (+)
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC104918652 coding upstream 442463 9870254 ~ 9879207 (+)
nxph2b nxph2b,LOC107686003,LOC107551792,LOC107715780,LOC107572939,LOC107687746,LOC107718217 coding upstream 531044 9785040 ~ 9790626 (+)
si:ch211-227n13.3 NA coding upstream 536765 9781131 ~ 9784905 (+)
phka2 phka2,LOC107718215,LOC107715813,LOC107685996,LOC107677496,LOC107573346 coding upstream 540931 9765169 ~ 9780739 (+)
LOC122354282 gmfb,LOC107705437,LOC107553212,LOC107602964,LOC102779377 coding downstream 389110 10711448 ~ 10715250 (+)
LOC122354281 cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446 coding downstream 394191 10716529 ~ 10721599 (+)
LOC122354278 LOC107654948,LOC107705440,LOC107736540,LOC107682154,LOC100538248 coding downstream 403813 10726151 ~ 10734638 (+)
LOC122354395 hrasls,LOC107569888,LOC107713876,LOC107693015,LOC108435900 coding downstream 438519 10760857 ~ 10761894 (+)
LOC122353582 NA coding downstream 715805 11038143 ~ 11042220 (+)
G80525 NA non-coding upstream 77599 10243868 ~ 10244071 (+)
G80531 dennd4a,LOC107596978 non-coding upstream 78249 10239845 ~ 10243421 (+)
G80523 NA non-coding upstream 229833 10085354 ~ 10091837 (+)
G80347 NA non-coding upstream 727859 9593255 ~ 9593811 (+)
G80346 NA non-coding upstream 729458 9591978 ~ 9592212 (+)
G80511 NA non-coding downstream 3312 10325650 ~ 10331888 (+)
G80554 NA non-coding downstream 33894 10356232 ~ 10357553 (+)
G80562 NA non-coding downstream 124112 10446450 ~ 10447785 (+)
G80621 NA non-coding downstream 244869 10567207 ~ 10570213 (+)
G80630 NA non-coding downstream 253066 10575404 ~ 10575994 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other upstream 781549 9521798 ~ 9540121 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other upstream 896368 9422950 ~ 9425302 (+)
itpr1b itpr1,LOC107685975,LOC107659525 other upstream 1342429 8891450 ~ 8979241 (+)
setmar setmar,LOC107686011,LOC107718240,LOC107659535 other upstream 1440014 8879583 ~ 8881656 (+)
brk1 brk1,BRK1,LOC106565571 other upstream 1442682 8875288 ~ 8878988 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other downstream 144284 10466622 ~ 10471187 (+)
G80638 NA other downstream 318794 10641132 ~ 10661970 (+)
G80761 NA other downstream 900009 11222347 ~ 11226622 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other downstream 1183315 11505653 ~ 11507771 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other downstream 1202685 11525023 ~ 11527042 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017068 NA coding CM030122.1 CM030122.1 43806964 ~ 43814318 (+)