trnaf-gaa_40


Basic Information

Item Value
gene id trnaf-gaa_40
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 2873176 ~ 2873248 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_1704
ggcgaaatagctcagttgggagagcgatagactgaagatctaaaggtccctggttcgatcccgggtttcggca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1704 True 73 tRNA 0.53 1 2873176 2873248

Neighbor

gene id symbol gene type direction distance location
LOC122354490 gata1a,LOC107727848,LOC107581944,LOC107685680,LOC107655033,LOC107749468 coding downstream 61812 2807984 ~ 2811364 (-)
trnai-aau_28 NA coding downstream 86230 2786874 ~ 2786946 (-)
trnaf-gaa_28 NA coding downstream 86389 2786710 ~ 2786787 (-)
trnaf-gaa_27 NA coding downstream 87956 2785148 ~ 2785220 (-)
trnap-cgg_6 NA coding downstream 88562 2784543 ~ 2784614 (-)
camk1b LOC107714490,LOC107566450,LOC107680448,LOC107572399 coding upstream 123251 2996499 ~ 3037108 (-)
gnl3 gnl3,LOC107714492,LOC107680445,LOC107566445 coding upstream 179448 3052696 ~ 3058430 (-)
LOC122354702 NA coding upstream 182449 3055697 ~ 3055773 (-)
si:dkey-33m11.8 si:dkey-33m11.8,LOC107555995,LOC107699328,LOC107751009,LOC108436238 coding upstream 383631 3256879 ~ 3264114 (-)
pusl1 NA coding upstream 412713 3285961 ~ 3299062 (-)
LOC122354391 NA non-coding downstream 73148 2799533 ~ 2800028 (-)
G78774 NA non-coding downstream 77880 2795022 ~ 2795296 (-)
G78773 NA non-coding downstream 172447 2700513 ~ 2700729 (-)
G78771 NA non-coding downstream 175704 2697228 ~ 2697472 (-)
G78769 NA non-coding downstream 176479 2696409 ~ 2696697 (-)
G78848 rpn1,LOC107714495,LOC107699351,LOC107573146,LOC107680451 non-coding upstream 205766 3079014 ~ 3079668 (-)
G78854 NA non-coding upstream 241049 3114297 ~ 3114570 (-)
G78899 LOC107556004,LOC107699348,LOC107714497 non-coding upstream 350487 3223735 ~ 3241319 (-)
G78903 NA non-coding upstream 357879 3231127 ~ 3232742 (-)
G78918 LOC107751023,LOC107680412,LOC107555990,LOC107699319,LOC107714481 non-coding upstream 392936 3266184 ~ 3266672 (-)
trnap-cgg_14 NA other downstream 534 2872571 ~ 2872642 (-)
trnai-aau_31 NA other downstream 1338 2871764 ~ 2871838 (-)
trnap-cgg_13 NA other downstream 2098 2871009 ~ 2871078 (-)
trnai-aau_30 NA other downstream 2906 2870197 ~ 2870270 (-)
trnaf-gaa_39 NA other downstream 3065 2870039 ~ 2870111 (-)
trnai-aau_32 NA other upstream 86 2873334 ~ 2873407 (-)
trnap-cgg_15 NA other upstream 897 2874145 ~ 2874216 (-)
trnaf-gaa_41 NA other upstream 1499 2874747 ~ 2874818 (-)
trnai-aau_33 NA other upstream 1654 2874902 ~ 2874977 (-)
trnai-aau_34 NA other upstream 3221 2876469 ~ 2876543 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnaf-gaa-151 NA coding NW_023493666.1 JAAXML020000359.1 584913 ~ 584985 (+)