RNA id: unassigned_transcript_1704


Basic Information

Item Value
RNA id unassigned_transcript_1704
length 73
RNA type tRNA
GC content 0.53
exon number 1
gene id trnaf-gaa_40
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 2873176 ~ 2873248 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggcgaaatagctcagttgggagagcgatagactgaagatctaaaggtccctggttcgatcccgggtttcggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252103.1 lncRNA downstream 73148 2799533 ~ 2800028 (-) True LOC122354391
TU116596 lncRNA downstream 77880 2795022 ~ 2795296 (-) True G78774
TU116595 lncRNA downstream 172447 2700513 ~ 2700729 (-) True G78773
TU116593 lncRNA downstream 175704 2697228 ~ 2697472 (-) True G78771
TU116591 lncRNA downstream 176479 2696409 ~ 2696697 (-) True G78769
TU116670 lncRNA upstream 66904 2940152 ~ 2942206 (-) False LOC122354337
TU116698 lncRNA upstream 205766 3079014 ~ 3079668 (-) True G78848
TU116705 lncRNA upstream 241049 3114297 ~ 3114570 (-) True G78854
TU116765 lncRNA upstream 350487 3223735 ~ 3241319 (-) False G78899
TU116775 lncRNA upstream 357879 3231127 ~ 3232742 (-) True G78903
XM_043252510.1 mRNA downstream 43109 2819588 ~ 2830067 (-) True LOC122354336
XM_043252686.1 mRNA downstream 57048 2813352 ~ 2816128 (-) False LOC122354491
XM_043252687.1 mRNA downstream 57048 2813352 ~ 2816128 (-) True LOC122354491
XM_043252685.1 mRNA downstream 61812 2807984 ~ 2811364 (-) True LOC122354490
XM_043252108.1 mRNA downstream 697249 1966493 ~ 2175927 (-) False ptprga
XM_043252511.1 mRNA upstream 66892 2940140 ~ 2942199 (-) True LOC122354337
XM_043252373.1 mRNA upstream 123251 2996499 ~ 3037108 (-) True camk1b
XM_043252372.1 mRNA upstream 123251 2996499 ~ 3037072 (-) False camk1b
XM_043251707.1 mRNA upstream 173490 3046738 ~ 3048224 (-) True spcs1
XM_043251705.1 mRNA upstream 179448 3052696 ~ 3058430 (-) True gnl3
unassigned_transcript_1703 other downstream 534 2872571 ~ 2872642 (-) True trnap-cgg_14
unassigned_transcript_1702 other downstream 1338 2871764 ~ 2871838 (-) True trnai-aau_31
unassigned_transcript_1701 other downstream 2098 2871009 ~ 2871078 (-) True trnap-cgg_13
unassigned_transcript_1700 other downstream 2906 2870197 ~ 2870270 (-) True trnai-aau_30
unassigned_transcript_1699 other downstream 3065 2870039 ~ 2870111 (-) True trnaf-gaa_39
unassigned_transcript_1705 other upstream 86 2873334 ~ 2873407 (-) True trnai-aau_32
unassigned_transcript_1706 other upstream 897 2874145 ~ 2874216 (-) True trnap-cgg_15
unassigned_transcript_1707 other upstream 1499 2874747 ~ 2874818 (-) True trnaf-gaa_41
unassigned_transcript_1708 other upstream 1654 2874902 ~ 2874977 (-) True trnai-aau_33
unassigned_transcript_1709 other upstream 3221 2876469 ~ 2876543 (-) True trnai-aau_34

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnaf-gaa-151 True 73 mRNA 0.53 1 NW_023493666.1 584913 ~ 584985 (+)