RNA id: XM_043252108.1


Basic Information

Item Value
RNA id XM_043252108.1
length 7003
RNA type mRNA
GC content 0.49
exon number 29
gene id ptprga
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1966493 ~ 2175928 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctctctctctcccaagCCTGTTTTAAAGTCTCTGCCAGACTTCAGCTCATGCGCTACTTCCTGGATGGCGGAATGGAAAGCTTCCAGAGCCGCTCCAACTCCTGTCTCTGTGTTTTCAGCCTGATGCATGGACTACCGCTCCTCTAACATCTCTCTCTTAATCCACCGTTCCCTTGACATGCTTCTCTTCTGGACTACAAGCTCGGCcgtctgaaagagagagagagagagcgagagagagagagaaagagagcgagagaaaagaagaagaagaaaaaactctTTCCTCTGGCTCGGTCGAacttcaaaagaaaagaaaaaacctcTCCAAAGGACTTCGTAAAGGAGGCGACCGAAACGCGTTGAAGAGCGTCCCCGCGCTTGTTTGTGGGAGTTTTTTTGTTCGCCAGGAGGATAACTCTGTCAACAGTTGCCTTATTCCAGATCTCCATGTATACGGTGTGACATGCGGAGGCTACTGCGACCGCGCCGCTGCTGCTGGTGGATTCCGCCTCTGCTTTTCTCCTCGCTCGTGCTCCGCTGGGCGCACTGTCATCCCGcACTGGCTGATGGGAACAAAGCGGAGCATCATGACCGGCCAATCGGTGAGAGGCACCGCAGAGCAGCCGAAGAGTCCTACTGGGCCTACTCAGGGACGTACGGACCAGATACAGGGTGGGCGGCAGCTTTTCCTGAGTGTCAGGAGAGAAACCAATCGCCGATCAATATAGCCGACCAAGACACCAAGGTCTCAATGGAGTTCCAGGAACTTACGTTGGATGGGTTTGATGCTGAGTCATCCAACAAGACATCAATGAAGAATACAGGCAAAACCGTGGCGATCTTCCTGAAGGACGATTATTTTGTGAGAGGAGCCGGGCTACCAGGCCGCTTCAAAGCTGAGAAGGTGGAGTTCCACTGGGGCCAGAGCAATGGTTCCGACGGCTCGGAGCACAGCATCAATGGCAGGAGATTCCCTGTGGAGatGCAGATCTTCATGTATAACTCAGACGACTTTGACAGTCTTAACACAGCCATACGGGAGAAGCGAGTAATTGCGGCCATGGCTGTCTTCTTTCAGGTGGGCATGAAGGACAATCCTGCAGTAGATCCGATCATTCATGGACTAAGAGGAGTGGTTCATCACGaaaaagaAACGTTTCTAGAGCCTTTCGTGCTTAGAGACTTGTTGCCATCCTCCATCGGGAGCTACTACCGCTACATCGGCTCCTTGACCACACCACCCTGCAGTAAAGTGGTGGAGTGGATCGTCTTCAGTCGGCCTGTGTTCCTCTCCTACAAACAGctgGAAGCGTTCTATTCCATCTTCACCACAGAACAGCAGGATCATGTTAAATCAGTGGAATACCTGCGTAACAACTTCCGCCCACTCCAGAGTCTGGACAACCGAGGGGTCTTCAAGTCCGCCGTCAAAGATGCTTGGCTGCCCGACTTGACCGACAGCCTGGGGAACCCATACGGTACTGAGGCTTCTAAAGCATGCAGCAGTGCCCCCATCAACATGAACGTCCAGCACATGAACAAGACGGCGCTTGTCGTTCGATGGTCCCGTCCGGAGATCACCTACGATCCACCCATCATGAGCTACCACATCTCCTACAGCTGGACCAGAAACGATGAGTCATATGAGGAGACGTACGTCAAAGGGAGCGATCAGAAACTGGAGGCCGTCATCGCCCCGGTGTCGCCGGACGTGCTGTACCTGTTCCGCGTCCAGGCGGTGTGTTTGAACGACAAGCGCAGTGACTTCAGCCAGAGCATGCTCTTCAGAGCCAACACCACCAGGATATTTGAGGGCACAAGAATAGTCAAAACTGGGATGCCAACTGTGTCCCCAGCATCTTCGGCAGACATGGCGCCCATAAGCTCCGGCTCCTCCACTTGGACTTCCTCGGGTCTCCCGTTCTCCTTCGTTTCGATGGCCACCGGCATCGGCCCCTCTTCCAGCGGCAGCCAAGCGACGGTGGCGTCCGTGGTGACCAGCACCCTCCTGGCGGGGTTGGGTTTCAGTGGCGGGGTCATCTCCTCCTTCCCTAGCTCCGTCTGGCCCACCAGGCCTCCGCCCTCCAGCCGCCAGACCCCAGCCAAACCCATGGTGACCACCGCAGAAGCCCCTTCCTCACCGGCCTCCGACGCAGACACCGGCGCAGCTGCAGAGAGCGACGGATCGGACGACGGGGCAGATAAGGGAGGGAAGGGTGAGGACGAGGATGGAGAAAAGAACggcgaagaagaagaagatgaggaCGAGGAGAAAGGTGCAGAGAGTAAAGTCGCCAGTGTTCCAGACGATGTTGAAAAGCAGACGAACAGCTCCGTGACCAAAGAGACGCCCACTGCAGTGCCGGATTCGACGGCgaaagagaaaggagaaaactCCACAGCACCATCTAGTGTCCCGGAGGACCACGcggagacaaacacacacaaaataaggGAAGAGGACACACAAGTCCTGCCAACCAGAGACCCGGTGGGTGATGAAAATGCGACAGCAGTAATAGAGACCCCAGACGACACGGCTTATACCAGCAAACCCAGCAGAGAAGACCGCAAACACGTGCCTCCTTTCTCCATACTTACAGagcgtACCATAGTCTCCAGCATGCACCCAGTGCCCGCTTCAGCACGGATGGAGTGGATCATTCCTCTGGTGGTGGTGTCGGCGCTCACCTTCCTCTGCCTCATCCTGCTGCTGGCCGTCCTGGTTTACTGGAGGAGGTGTTTCCAAACGGCTCATTTCTACGTCGAGGACAGTAGCTCTCCCAGAGTTGTGCCCAATGAGAGCATCCCGGTCATCCCCATCCCAGaTGATATGGAGGCCATCCCTGTTAAACAGTTTATCAAGCATGTATCAGAACTCTACTCCAACAACCAACATGGGTTCTCAGAAGAGTTTGAGgaaGTGCAGCGCTGCACAGCAGATATGAAGATCACATCAGAACACTCCAATCACCCTGACAACAAGCACAAAAACCGATACATCAACATCATAGCCTATGACCACAGTCGAGTGAAGCTCAGGCCTCTGGCGGGAAAAGACTCCAAACACAGTGACTACATCAATGCCAACTACGTGGATGGCTACAATAAACCCAAGGCCTACATCGCAGCTCAGGGTCCTCTCAAGTCCACATTCGAGGATTTCTGGCGGATGGTGTGGGAACAAAACACCGGCATTATAGTCATGATCACTAACCTGGTAGAGAAAGGCAGAAGAAAATGCGACCAGTACTGGCCAACAGAGAACAGCGAGGAGTACGGTAACATCGTGGTGACTCTAAAGAGAACCAAAGTAATGGCGTGCTACACACTCCGCATCTTCACTATCAGAAACACCAAAGTAAAGAAGggtCAGAAGGGTAACACTAAGGGACGTCAGAGTGAAAGAACGGTTCTGCAGTATCACTACACTCAGTGGCCTGATATGGGCGTCCCTGAATACACGTTACCCGTGCTCACCTTTGTCAGGAAGTCCTCTGCCGCTCAGACTCCAGAGATGGGCCCTATGCTCGTACACTGCAgTGCTGGCGTGGGCAGGACGGGAACTTATATTGTGATTGACAGCATGCTGCAGCAGCTGAAAGATAAAGGCTCGGTCAATGTGCTGGGTTTCCTCAAACATATACGAACGCAGAGAAACTATCTGGTCCAGACGGAGGAGCAGTATATCTTCATCCACGATGCCTTGATGGAAGCCATTCTTGGGAAGGAAACAGAGGTGCCCTCCAGTCAGCTGCACAGTTATGTCAACAACATCCTGACGCCGGGCCCAGGGGGCAAAACACGACTGGAGAAGCAGTTCAAGTTGGTGACTCAGTGCAATGCGAGATTTGTGGAGTGCTTCAGTGCTCAAAAAGAATGCAACAAGGAGAAAAACCGCAACTCTTCTGTTGTCCCATCGGAAAGAGCACGTGTTGGTCTCGCACCGTTGCCTGGAATGAAAGGCACTGATTACATCAATGCATCTTATATAATGGGCTTTTACCGGAGCAATGAGTTCATCATTACCCAGCATCCCTTGCCTCACACCACTAAAGATTTCTGGAGGATGATCTGGGACCACAACGCTCAAATCATCGTCATGTTACCAGACAACCAGGGCCTGGCGGAGGACGAGTTCGTGTATTGGCCGAGTCGAGAGGAAGCCATGAACTGTGAGGCGTTTACAGTCACTCTTATCAGTAAAGACAGACTCTGCCTCTCCAGTGAGGAGCAAATCATCATTCATGACTTCATCCTGGAGGCCACACAGgATGATTACGTTTTAGAAGTTCGTCATTTTCAGTGCCCAAAATGGCCAAACCCAGACGCTCCCATCAGCAGCACCTTTGAGCTCATCAATGTCATTAAAGAAGAGGCCATGACCAGAGACGGACCCACTATAGTGCATGATGAGTTTGGCGCGGTGTCTGCTGGGATGTTATGTGCTCTCACCACACTGTCGCAGCAGCTGGAGAGCGACGGAGCTGTGGGGGTCTACCAGGTGGCCAAGATGATCAACCTCATGAGACCAGGAGTCTTTACCGACATCGAACAGTACCAGTACCTTTACAAAGCTATGCTCAGCCTGATAAGCACTAAAGAGAACGGATCCAGCCCCATGTCCCTGGACAGGAACGGCAGCGTGGCCATGTCTGACGAGTCGGACCCGGCCGAAAGCATGGAGTCGCTCGTCTGAAGCCCCTCCGAACGGGCCGCGAAGAGGCACTTACTCTAACTTTGTAAAACTTCAAGGACTAAGACAGACTTTTTCTGAGGCCTTTTTTGCCAGAACTCTTGGTTAAAAGAATAACCTGATTACTTTTTTACACTGATAAAaagtttttgatatttatttttttcgcCATTTTATGTCTTAATGTTATCCTACTGAAACATTTGCACCGACGTTTTTGAGTTCACGACAAACGAAGCGAAACGAAACGAAACACGGTTCTGTCTAGTTTGCACTATGAAAAATATCAGTGTTACTGCCTAACTCCGCCATCTCCGCCACGGCCAGTCTCCCGCTCGCTCCAACCGTCCCGACATTCCACGATAAAGCGGCTCTCCGAAGCTTTACAGATAAACGTTTTCCACGCACACCTCAGACGCTGGAAAAAGAGATTACTCCCGTGTCCGGAGCTCCGATTCGCCCGCGAAAGACCGTACGAGCAATATGGATTATGTTCGTTTTGATTCTCGTTTGCTTTGATCATTTCGCGCGCCTCCCCCGAATAGTATATCTACCCATTACGCTTCTAGTTAAACCCATGTTTGCTTTCGAAAGGTGGTATTAAAACGGCTACTGTGAACTTTTTGTATGATTCATATTctgcttttaatatatatgaatatatcgTATATCATGATAACTTGTGCTTTTGTAAATGTCGTCTGTCTCCACGAGCAGCCGTCACGGTCTCGTGACTCCTCTAGCGCCCCCTGCTGGTTTGGTTTCTCCATCGCTTCACGCTGCAAGCTGCTACTTTTGTCGCTCGTGACCGAACACCGCGCGACTCGTAACGTTGGAGCCGGTTCTGTCCCCCGCCCgcttcattttgtaattttatactGCTCTACTTCGTCCTGGGTTCGCCGACATACGCCGTCCCGTAACTTTGAGAATAATGTATACAAGTCTCTCGATGCCTTCTGTACAGTCTCATTTCACCTcggcaggtgtgtgtgtgtgtgtgtgtgtgatataagTGTGTGTCGTGTTTGGTATTGACTGGTTTTACTAGACGCTTGTAGACTCGGTCCGAGCATTTCTTCACTAAACTGACCTCTTTTTACGCGTCTCTCATTTCCTGTCATCGATCCTCAGACACCGCTAGGGGAAAGAGTTACTGTAATATCGCAAACGGTCGTCTCGCGCCACACGCAGCACAAAGGCCTTGCTAACGAAACATTAGAATCAGTCTTACCGCTTCGAAAAATTCATTGATTTTTACCAAAGACTACAGCTGTCGTTCGCTCCAGTCAcgaaaaagttgttgttttttttatgacaggTTAAAGCAGTTTTAAgcagaatgtttttttggaaGCGACTGGAAAAACTATGTCGAAAGTGTCGACGTCGTGTGTCTCGCTTCGCGTTTTCGCTTTCCGTCTGTTGCTTTCGCGGTTTTATTGTTCGTTTCGCTTTCGTCCGAGCATTTGTTGATCCGACAGGTCgtgtttctttcctttttttatgtcCTAATGAGAATGTATGCCATCACTGATTTCTTTTGACGTGAATGAGAAAGCTAATGATTCAGAAATGCGTTACGCTGTTGAGGCGGGAAAGACGCTCAGTTCCAATTGAAGTCACGTCTCTCCAACATTTGGGGTAATATTCTGACTTTGCTTCGCGTACGACGACTGGATCTGACGAGTTGCATTTCTATGTTTTTTCTAACatttgttggggtttttttgtcctgtggcgtctctttttttttccttctctcgcGTTGTTCGTGCGttgtcatgttaaaaaaaatgtacatatctCTCCGTTAACTCGTCAGTCTCTAAAAGCTTTGTATCCTGGCATATAATTGCAAACGTTATATTTTCATATGGATCGGTTTGTTTTTAGTTTCGTGTGTAGTTCTCATTATGATGGTCAACACGAAACGTCCCCGAATCCCCCGGAAGGTGGCTGACATCGCATCCCAGACACACAACGATCATAAAGGCAGTGATTGTggtatttctgttttcttcccGCCCTTCGCGTCGAAATTATTTCATTGTCCACACACGCaatagaataaaagaataagTTCTCCCGTACAAAGCAGGTGGGTGTCGCCATCATATCCACTTTTTCTAATCTGGAATAACAcacaaaggatttttttttctccctttttttttgttgaaggagttttctttctttttctttttgttgaaaGCTATATCAAAGCATTCTATTATAgtgttatttaatatgtaaattgtATTgctatacataaataaaatatgagttTTGATGTACTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116534 lncRNA downstream 42211 1923705 ~ 1924282 (-) True G78726
XR_006252086.1 lncRNA downstream 225475 1739700 ~ 1741018 (-) True LOC122354127
TU116306 lncRNA downstream 285333 1588704 ~ 1681160 (-) False LOC122354408
TU116313 lncRNA downstream 285333 1593234 ~ 1681160 (-) False LOC122354408
TU116271 lncRNA downstream 452590 1512836 ~ 1513903 (-) True G78574
TU116575 lncRNA upstream 307743 2483670 ~ 2484844 (-) False LOC122354525
XR_006252118.1 lncRNA upstream 307768 2483695 ~ 2484928 (-) True LOC122354525
TU116576 lncRNA upstream 311557 2487484 ~ 2487836 (-) True G78756
TU116591 lncRNA upstream 520482 2696409 ~ 2696697 (-) True G78769
TU116593 lncRNA upstream 521301 2697228 ~ 2697472 (-) True G78771
XM_043252529.1 mRNA downstream 2883 1953550 ~ 1963610 (-) True cse1l
XM_043251248.1 mRNA downstream 13391 1949640 ~ 1953102 (-) True LOC122353511
XM_043251246.1 mRNA downstream 13396 1950040 ~ 1953097 (-) False LOC122353511
XM_043251247.1 mRNA downstream 13398 1950040 ~ 1953095 (-) False LOC122353511
XM_043252950.1 mRNA downstream 24112 1937369 ~ 1942381 (-) True slc35e1
XM_043252685.1 mRNA upstream 632057 2807984 ~ 2811364 (-) True LOC122354490
XM_043252686.1 mRNA upstream 637425 2813352 ~ 2816128 (-) False LOC122354491
XM_043252687.1 mRNA upstream 637425 2813352 ~ 2816128 (-) True LOC122354491
XM_043252510.1 mRNA upstream 643661 2819588 ~ 2830067 (-) True LOC122354336
XM_043252511.1 mRNA upstream 764213 2940140 ~ 2942199 (-) True LOC122354337
XR_006252158.1 other downstream 89078 1877275 ~ 1877415 (-) True LOC122354708
XR_006252157.1 other downstream 91704 1874649 ~ 1874789 (-) True LOC122354706
XR_006252159.1 other downstream 94188 1872166 ~ 1872305 (-) True LOC122354709
XR_006252143.1 other downstream 96809 1869547 ~ 1869684 (-) True LOC122354692
XR_006252144.1 other downstream 99084 1867270 ~ 1867409 (-) True LOC122354693
unassigned_transcript_1621 other upstream 525281 2701208 ~ 2701279 (-) True trnap-cgg_2
unassigned_transcript_1622 other upstream 525881 2701808 ~ 2701885 (-) True trnaf-gaa_2
unassigned_transcript_1623 other upstream 526869 2702796 ~ 2702867 (-) True trnap-ugg_6
unassigned_transcript_1624 other upstream 527468 2703395 ~ 2703472 (-) True trnaf-gaa_3
unassigned_transcript_1625 other upstream 527632 2703559 ~ 2703632 (-) True trnai-aau_3

Expression Profile