RNA id: unassigned_transcript_1623


Basic Information

Item Value
RNA id unassigned_transcript_1623
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnap-ugg_6
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 2702796 ~ 2702867 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggctcgttggtctaggggtatgattctcgctttgggtgcgagaggtcctgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116595 lncRNA downstream 2067 2700513 ~ 2700729 (-) True G78773
TU116593 lncRNA downstream 5324 2697228 ~ 2697472 (-) True G78771
TU116591 lncRNA downstream 6099 2696409 ~ 2696697 (-) True G78769
TU116576 lncRNA downstream 214960 2487484 ~ 2487836 (-) True G78756
XR_006252118.1 lncRNA downstream 217868 2483695 ~ 2484928 (-) True LOC122354525
TU116596 lncRNA upstream 92155 2795022 ~ 2795296 (-) True G78774
XR_006252103.1 lncRNA upstream 96666 2799533 ~ 2800028 (-) True LOC122354391
TU116670 lncRNA upstream 237285 2940152 ~ 2942206 (-) False LOC122354337
TU116698 lncRNA upstream 376147 3079014 ~ 3079668 (-) True G78848
TU116705 lncRNA upstream 411430 3114297 ~ 3114570 (-) True G78854
XM_043252107.1 mRNA downstream 526868 1966493 ~ 2175928 (-) False ptprga
XM_043252106.1 mRNA downstream 526868 1966493 ~ 2175928 (-) True ptprga
XM_043252108.1 mRNA downstream 526869 1966493 ~ 2175927 (-) False ptprga
XM_043252529.1 mRNA downstream 739186 1953550 ~ 1963610 (-) True cse1l
XM_043251246.1 mRNA downstream 749699 1950040 ~ 1953097 (-) False LOC122353511
XM_043252685.1 mRNA upstream 105117 2807984 ~ 2811364 (-) True LOC122354490
XM_043252686.1 mRNA upstream 110485 2813352 ~ 2816128 (-) False LOC122354491
XM_043252687.1 mRNA upstream 110485 2813352 ~ 2816128 (-) True LOC122354491
XM_043252510.1 mRNA upstream 116721 2819588 ~ 2830067 (-) True LOC122354336
XM_043252511.1 mRNA upstream 237273 2940140 ~ 2942199 (-) True LOC122354337
unassigned_transcript_1622 other downstream 911 2701808 ~ 2701885 (-) True trnaf-gaa_2
unassigned_transcript_1621 other downstream 1517 2701208 ~ 2701279 (-) True trnap-cgg_2
XR_006252158.1 other downstream 825381 1877275 ~ 1877415 (-) True LOC122354708
XR_006252157.1 other downstream 828007 1874649 ~ 1874789 (-) True LOC122354706
XR_006252159.1 other downstream 830491 1872166 ~ 1872305 (-) True LOC122354709
unassigned_transcript_1624 other upstream 528 2703395 ~ 2703472 (-) True trnaf-gaa_3
unassigned_transcript_1625 other upstream 692 2703559 ~ 2703632 (-) True trnai-aau_3
unassigned_transcript_1626 other upstream 2095 2704962 ~ 2705039 (-) True trnaf-gaa_4
unassigned_transcript_1627 other upstream 2267 2705134 ~ 2705207 (-) True trnai-aau_4
unassigned_transcript_1628 other upstream 3069 2705936 ~ 2706007 (-) True trnap-cgg_3

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnap-ugg-383 True 72 mRNA 0.60 1 NW_023494071.1 49601 ~ 49672 (+)