RNA id: XM_043252510.1


Basic Information

Item Value
RNA id XM_043252510.1
length 4147
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC122354336
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 2819588 ~ 2830203 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATCATCATGTGAAAATAGGCGACCTGTTTAATGGACGGTATCACATAATCCGGAAGCTGGGATGGGGTCATTTCTCTACTGTTTGGTTTGCTTGGGACATACAAGGGAAGCGTTTTGTGGCCATGAAAGTGGTTAAGAGCGCAGAGCACTACACTGAAACGGCACTCGATGAGATCAAGCTCCTGAGAGCGGTCAGGAACACAGACCAGAACGATCCCAGCAGGGAGAAAGTGGTGCAGTTATTGGACGACTTCAAGATCTCGGGCGTGAATGGAACCCATGTATGTATGGTGTTTGAAGTTCTCGGCCACCATCTGCTGAAGTGGATTATCAAGTCCAACTACCAGGGCCTTCCGCTGCCGTGTGTCAAGAGCATTATTCGGCAGGTTTTGCAAGGCCTGGATTACCTGCACACCAAGTGTAAGATCATTCACACGGATATAAAGCCTGAAAACATCTTGATGGATGTGAATGAGGCGTATGTCAAAAGACTGGCAGCAGAGGCCACAGAATGGCAGAAATCTGGAGCTCCGCCACCTTCAGGATCTGCAGGTGACAGCAAGCACTGCTCTGCTTATTTAGGGATTATTAACAGGCTATTTTTTACAGCTGTGGGGAAGatctccaaaaataaaaagaaaaagctgaagAAGAAGCAGAAGCGGCAAGCAGAGCTGCTGGAAAGACGCATGCTGGAGATCGAAGCTCTGGAGCGAGAGGCGGAGAAGCAGAGATCCAGCGGAGCGTCAGACTCGACACACGGTCCCAGCCTGGCGCTGGCGGACAGcgaggaggatgaagaggatgatgaggatgaggaagaggaggcagAGGGAGAGAAGGAGCGGCCTGTCAGACTCACCAACCATACATGTGCAGAGCCAGATCAGGATCAAGATCAGGATCAGGATCAAGATCAAGATCAAGATCAAGATCAGGATCAGGATCAGGATCAGGATCAAGATCAGGATCAGGATCAGGTTCAAGATCAAGATCAGCATCAGCAGGAAATACAGGAGAATGAGGAAGGTTGTGACATCCTTGCCGCCGCAGATGGTCTTGCTGAAGAAGagtcacacacacgcacacacactccaccTGAGCGACAGGACACTCCTGAGAATGAGAACGAGTGTGAAAACTCAAAAGAACATGAGCAGGATGGAAATGAAGCtgtgagagaggaagaggaagaggaagaggagaataaaacagaggaagaggaaacgGAAACGGAAGGCACACTCTCACAGAGCGCAGAGGACGAGACGAAGACACACGAGTGTCCAAATGAAGAAGAAGCAGATCCACCTGAAGAAACGATAGAGAAACAAGAaaatgaggaggaggaggaagaggaggaagatgaagatgaagaatatgaggaagaggaggaggaggaggcggagGATGAAGGCCAGAAACCATCCAGCAAGGAGCACACTGAAGTGTGTAAAACGAACGGTCACGTGATCTTGAGTGCACAGGAGCGTCtgtcctcacctctgctctgtCCTCTGGTGGAGTCTGAGATCAGTACAACTGACCGCGACGCTTCGGACGCCTCGTACGAGCTTTTCAACGGAGAGACCTCGCTGACGAACGGAGCACGGCACCGCGGCACCACGCCACGCTTCCCAGAGCTTCCTCTGGATCCTGAGCCTGACGACTgtCCTCTGGTGGAGTCTGAGATCAGTACGACTGACCGCGACGCTTCGGACGCCTCGTACGAGCTTTTCAACGGAGAGACCTCGCTGACGAACGGAGCGCGGCACCGCGGCACCACGCCACGCTTCCCAGAGCTTCCTCTGGATCCTGAGCCTGACGACTGCGAGCGCAACGAGGCCCAGGCGCTCAACACCGACCGCAGCCGAACGGTGTCATCGTCCAGCACCGGAGACACGCCCAAAGTGAGGGTCAGAGCAGCCGATCTTCTGGTGAATCCTCTGGATCCGAGGAACGCAGACATTCTGAGAGTCAAAATCGCCGATCTGGGCAATGCATGCTGGGTGCACAAGCACTTCACTGAGGACATCCAGACGCGGCAGTACCGCTCCATCGAGGTGCTGATCGGAGCGGGATACAGTACTCCTGCTGATATATGGAGCACGGCCTGCATGGCGTTTGAGCTGGCCACCGGGGACTATCTGTTTGAGCCACACTCTGGTGAAGACTACTCTCGTGATGAAGATCATATAGCTCACATCATAGAGCTTCTCGGCTGCATTCCTCGTCACTTTGCTCTTTCTGGAAAATATTCCCGAGAATTCTTCAACCGGAGAGACCACATCGCTCTGATTATGGAGTTACTGGGAAAAATCCCCCGCAAGATCTTCGCAGCTGGAAAATACAGCCGTGAGTTCTTCTCAAAAAAAGGTGAACTGAGGCACATCACCAAGCTCAAGCCCTGGTCTCTGTTTGATGTTCTTGTGGAGAAATACGGTTGGTCAGCTGAGGATGCTGGTCACTTCACACACTTCTTGCTGCCCATGCTGGAGATGGTGCCGGAGAAACGGGCCTCTGCCTCAGAATGCCTCAACCACCCCTGGCTGAACTCGTAGCACTTTGGCCCCTCAGACTCATCGACCCCTGCGGCCCCGTCCTGACCTTCAGCCTGCTGCCatcagagagaaagagccaGAGAGAGGAGGCTTCAGAGGGGCGAGGGCGGGCttcggcacacacacacacactcagacacacactcacactgaaacacgcacatacacaaactcacaaacatttactcattcatacacacacttgCATACTCACAACCACTAACACTAAAACACTCGCACAAAAGCTTCATTCAGTCTGCGTCAGCCTCATTCAACTAAACTTTACACgcagaaaacagaaagaaataatttcatcagataaaatatattctattcctttatttgattaaatatcatgatatttcatttaaagaaacaagaGTGTGGATCAGTGGCGGCATGTACTCGTGCCTTCAGCTAAACTCTTGTGAACGTCctagcaaaacaaataattgtacatttacaaacattacaaattcaaacatttacaaacattacGGACTCAGTGACTGTGAGTATGAGAgtcaccgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagtgagattgtgtgtgtgtgtgagaaagtgagattgtgtgtgtgtgtgagagagtgagattgtgtgtgtgagtataatttgtgtgtgtatgtgtgagagagtgtgtgtttgtgagaatgtgaaattgtgtgtgtgtgtgtgtgtgtgctagtcGGTGTTTCTGACAGGAAGCCCACCTGAGTCCCTCTGCATGAAGCCCCGCCTCTTTCATCCCACCATCCAATCAGATTTTGCAGTGGAGCTGTTTACAAACctcacccctctctctctcacacacacacacacacactgccctGGGAAATATGAATCCAGAAGACAAAGAGACGCTTGGTTTCGTGGAGCGCAAGCACCAGAGATTGTTGGATTAATGTTTTGATTCGAAGCTTCGGTTCCTGGTTCTGCGGCGGGCTCTGCTCTTTCTCCGGCAGGACGGCCATGGCTGCACTTGTGTTTGTACTTTTTGTTCAGGGAAACGTACCGATTTACAGAGATCCAGCAAACTGTCCAAAAAACTCGCAACTGCTTGAGCTCAAGATAAACACGCGGTCGTCATGGAGACGCGCCGCAGCAGTTCCTGTGGCCTCGCGCTACTCAAAACACATCTTCTTTCGTCATCGTCACAGTTAGTCCAGTTGCCTATTTTCGCAATAAAAGTAGatggtgaaatatttttaaaaatatttaaattcatttaaaagaaaagcagttCTCTGATGTTGTGACAGTGACAGAGTTTAGTCGTAATAAGGTGATTGTGTTTCGTCTATTCTGAgatgttttatttcctttgttttggtttttattcaGTTGTCTCTTCCTTCATGACATTGACTCGTGCTGCTCTGTGAGGACTCGTGTGACAGTCATGAATTTTATTGAAGATTTTTGCAATAATAGCGATATGATGATGAACTTTTGCACCGGAAGCTCCAGATGTGTCTCACGCTGACTGTTCTTCCCAACTCCACAAATGcgtctttgtttttcattgacagatttaataaaattgtaaattaatgGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252103.1 lncRNA downstream 19560 2799533 ~ 2800028 (-) True LOC122354391
TU116596 lncRNA downstream 24292 2795022 ~ 2795296 (-) True G78774
TU116595 lncRNA downstream 118859 2700513 ~ 2700729 (-) True G78773
TU116593 lncRNA downstream 122116 2697228 ~ 2697472 (-) True G78771
TU116591 lncRNA downstream 122891 2696409 ~ 2696697 (-) True G78769
TU116670 lncRNA upstream 110085 2940152 ~ 2942206 (-) False LOC122354337
TU116698 lncRNA upstream 248947 3079014 ~ 3079668 (-) True G78848
TU116705 lncRNA upstream 284230 3114297 ~ 3114570 (-) True G78854
TU116765 lncRNA upstream 393668 3223735 ~ 3241319 (-) False G78899
TU116775 lncRNA upstream 401060 3231127 ~ 3232742 (-) True G78903
XM_043252686.1 mRNA downstream 3460 2813352 ~ 2816128 (-) False LOC122354491
XM_043252687.1 mRNA downstream 3460 2813352 ~ 2816128 (-) True LOC122354491
XM_043252685.1 mRNA downstream 8224 2807984 ~ 2811364 (-) True LOC122354490
XM_043252107.1 mRNA downstream 643660 1966493 ~ 2175928 (-) False ptprga
XM_043252106.1 mRNA downstream 643660 1966493 ~ 2175928 (-) True ptprga
XM_043252511.1 mRNA upstream 110073 2940140 ~ 2942199 (-) True LOC122354337
XM_043252373.1 mRNA upstream 166432 2996499 ~ 3037108 (-) True camk1b
XM_043252372.1 mRNA upstream 166432 2996499 ~ 3037072 (-) False camk1b
XM_043251707.1 mRNA upstream 216671 3046738 ~ 3048224 (-) True spcs1
XM_043251705.1 mRNA upstream 222629 3052696 ~ 3058430 (-) True gnl3
TU116656 other downstream 3478 2813505 ~ 2816110 (-) False LOC122354491
unassigned_transcript_1680 other downstream 32642 2786874 ~ 2786946 (-) True trnai-aau_28
unassigned_transcript_1679 other downstream 32801 2786710 ~ 2786787 (-) True trnaf-gaa_28
unassigned_transcript_1678 other downstream 34368 2785148 ~ 2785220 (-) True trnaf-gaa_27
unassigned_transcript_1677 other downstream 34974 2784543 ~ 2784614 (-) True trnap-cgg_6
unassigned_transcript_1681 other upstream 7216 2837283 ~ 2837354 (-) True trnaf-gaa_29
unassigned_transcript_1682 other upstream 8174 2838241 ~ 2838312 (-) True trnap-ugg_7
unassigned_transcript_1683 other upstream 8780 2838847 ~ 2838919 (-) True trnaf-gaa_30
unassigned_transcript_1684 other upstream 9744 2839811 ~ 2839881 (-) True trnap-cgg_7
unassigned_transcript_1685 other upstream 10349 2840416 ~ 2840486 (-) True trnaf-gaa_31

Expression Profile