RNA id: TU116670


Basic Information

Item Value
RNA id TU116670
length 1918
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC122354337
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 2940140 ~ 2942206 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACCAACTGAAGAGATTCCCAAGACCCTGATAGTTAACAGGAATGACAATATAGTCACCATTTACTCTGCCTTattttgttccaaacatctttctttcatttacagcaaacaaaatgtgaagtttcaatactttacaataaggttttaTTGGTTAACATTCGATAAAGGCacgaaaaataaaactgacatcATTTAGTGACCCTCAggttgtttctttcttctgttgaacacaaaagaagatcaTTCTGAGGAATACAGGTAGCCAAACAGAGTTGGCGTTGACTTCCATGGCATGGAAAAAAAGGGGGATAACCAGTTGGGACCATCAAGTGTTTGGTTACTcatattcttcaaaaatatcttctcttgtattcagcagaagaaagaaattcatacagatttggtaCAATGTtggggtgagctatccctttaagtacattagttaacattaactacactatttattcattttagcattttagcatacatttttaagattaacCGTTGTATTTGTTAGCATGAACACGATCTAAAAATAACAGAAGTTCTGATAATTGGTCGTTTATAACATATTTACTTATGCTAACTAATGAAACCtaattgtaaagtgttatcgAAGATTAAACGTTACCAATATGTTGAAGACTATTCAAGCTCTTTTCCATATCACGAAATTAATTGTGACTTCGGGAAAATCTGAGCTATAAAGAGGACAAGGTCtaaattagacaaaaaaaaacagtatatgaAAACACTAGTATGTCTGAATTCATACTATTTATAAAACAGTCGCCCAGATGACTAACTACTTCCATCAAGGTTCAGGGGTGCACATGCAATGCATAAAGTTATTACCCATGAGGCCACAGAAAGGGAATCGTGAATGGCGGGAATAGGATGCAACTAATTCACTATAGgtctgtcacggtgtggtttacaACTTTAATCATTcacatataaagaaataatacctCGGGCAGGTACAGGCAGATAAACGAAACCACACGTGATATAGACAAAGTCAGACAAGCTGAATACAAacaacaggacttaaatacacgtaaatacttaataaacgagacacagctgaacacgatAAGACAGTTAACTAAACGTAGGTCACACGGGGCACacggcacgagacaaaaacaacaaccaaaaggagtccacgtgtgacaaGGTCACATGACGATGACAACGTGgcaaattacattacattacattgttTCTGTCCAGAGGTAGTGCCTACTAAGACAGTATGCCGTCAAAGATGGGGGAAATGCatatctatatttatgtatttaatcccATGTTATTAACCAGTGTCTTTACTACTGACTTTCGATGATCCAATTCGACCTTGCTATGCCAAAACGGcacatttgtgtttcatttttgttatcgGTGAATATATGGTGTGCCCTCAACTGTACAGATGTGAATGTACATCTCATTCTACCTGAGTTGTATTCATTAAACAGAAAGACCTATGGGACAGCCCCTAGTCACTATATGGTTTTGTTATACGGAGAAGAGCAGCATTTCTCAGTTTCTTTTTGTCCGCGTTTCTGTGGATTCGACCATAAGCTATTACCAGATGCTAACATAAACATAAAGAGCTCTTATTCGCAGTGTATGCCGCTTCATCCTTCACAGGTATGAATGGAATGGCCCCAGGTTCTACAGGAAGCACTTATGGGACTCAGATGGGTGTGATGAATTCGGGCCAGCAGGCCCCTCCACCCTACCCGGGGCAGGGCCAGGTTGGGCAGCCCGCTCTGCAGCAGCCCTCCACCCCTATATTTGTGGCTCCTCCGCCCAAACCACAGCGACTGCTCCATTCTGAGGCTTACCTGAGATACATAGAAGGACTCAGCGCTGAGTCCAATACTGTCAGCAAATGGGACCAAACGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252103.1 lncRNA downstream 140124 2799533 ~ 2800028 (-) True LOC122354391
TU116596 lncRNA downstream 144856 2795022 ~ 2795296 (-) True G78774
TU116595 lncRNA downstream 239423 2700513 ~ 2700729 (-) True G78773
TU116593 lncRNA downstream 242680 2697228 ~ 2697472 (-) True G78771
TU116591 lncRNA downstream 243455 2696409 ~ 2696697 (-) True G78769
TU116698 lncRNA upstream 136808 3079014 ~ 3079668 (-) True G78848
TU116705 lncRNA upstream 172091 3114297 ~ 3114570 (-) True G78854
TU116765 lncRNA upstream 281529 3223735 ~ 3241319 (-) False G78899
TU116775 lncRNA upstream 288921 3231127 ~ 3232742 (-) True G78903
TU116768 lncRNA upstream 291053 3233259 ~ 3234678 (-) False G78899
XM_043252510.1 mRNA downstream 110085 2819588 ~ 2830067 (-) True LOC122354336
XM_043252686.1 mRNA downstream 124024 2813352 ~ 2816128 (-) False LOC122354491
XM_043252687.1 mRNA downstream 124024 2813352 ~ 2816128 (-) True LOC122354491
XM_043252685.1 mRNA downstream 128788 2807984 ~ 2811364 (-) True LOC122354490
XM_043252107.1 mRNA downstream 764224 1966493 ~ 2175928 (-) False ptprga
XM_043252373.1 mRNA upstream 54293 2996499 ~ 3037108 (-) True camk1b
XM_043252372.1 mRNA upstream 54293 2996499 ~ 3037072 (-) False camk1b
XM_043251707.1 mRNA upstream 104532 3046738 ~ 3048224 (-) True spcs1
XM_043251705.1 mRNA upstream 110490 3052696 ~ 3058430 (-) True gnl3
XM_043252009.1 mRNA upstream 311657 3253863 ~ 3256212 (-) True cdab
unassigned_transcript_1766 other downstream 9183 2930895 ~ 2930969 (-) True trnai-aau_63
unassigned_transcript_1765 other downstream 10882 2929193 ~ 2929270 (-) True trnaf-gaa_64
unassigned_transcript_1764 other downstream 14610 2925469 ~ 2925542 (-) True trnai-aau_62
unassigned_transcript_1763 other downstream 14769 2925311 ~ 2925383 (-) True trnaf-gaa_63
unassigned_transcript_1762 other downstream 16150 2923927 ~ 2924002 (-) True trnai-aau_61
unassigned_transcript_1767 other upstream 4035 2946241 ~ 2946310 (-) True trnap-ggg
unassigned_transcript_1768 other upstream 7159 2949365 ~ 2949436 (-) True trnap-cgg_20
unassigned_transcript_1769 other upstream 7763 2949969 ~ 2950039 (-) True trnaf-gaa_65
unassigned_transcript_1770 other upstream 9321 2951527 ~ 2951597 (-) True trnaf-gaa_66
unassigned_transcript_1771 other upstream 10870 2953076 ~ 2953147 (-) True trnaf-gaa_67

Expression Profile