RNA id: XR_006252118.1


Basic Information

Item Value
RNA id XR_006252118.1
length 463
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id LOC122354525
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 2483670 ~ 2484928 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgtgaaatatttcagttttttcgaCAATGGaaaattacttcttttttttttttttactctacagttgtacagtataaaatcataaaacatggaaactcAACACGGATATAATAAAACCCAACAAAAATTACCTAAGAGAATCTTAAGAGACAGAATATGAAAACAATGCTAGCTGAGAAGAACTGCTATAACTATTCGACTTGTATATATCCAGGGCTCTCATAGGAAGTGCTgctgattttgttttgtcttgtgcaGCTTCAGAAACATGATCGGGAAAATGAGGATGTTCCTTCCAAATGGAGATCAGAAGAGGAGATGGCGAAAGAAGCTACAGAATTACACAACCTCTTCAACTAGCTTCTTTAGttggaTATGGAGGACATCAACAAGTTGCAGATGGAAGACATCGAGAAGTTCTTATCTACCTTGAGCgtctattcaaataaaaaaaatagttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116534 lncRNA downstream 559413 1923705 ~ 1924282 (-) True G78726
XR_006252086.1 lncRNA downstream 742677 1739700 ~ 1741018 (-) True LOC122354127
TU116306 lncRNA downstream 802535 1588704 ~ 1681160 (-) False LOC122354408
TU116313 lncRNA downstream 802535 1593234 ~ 1681160 (-) False LOC122354408
TU116271 lncRNA downstream 969792 1512836 ~ 1513903 (-) True G78574
TU116576 lncRNA upstream 2556 2487484 ~ 2487836 (-) True G78756
TU116591 lncRNA upstream 211481 2696409 ~ 2696697 (-) True G78769
TU116593 lncRNA upstream 212300 2697228 ~ 2697472 (-) True G78771
TU116595 lncRNA upstream 215585 2700513 ~ 2700729 (-) True G78773
TU116596 lncRNA upstream 310094 2795022 ~ 2795296 (-) True G78774
XM_043252107.1 mRNA downstream 307767 1966493 ~ 2175928 (-) False ptprga
XM_043252106.1 mRNA downstream 307767 1966493 ~ 2175928 (-) True ptprga
XM_043252108.1 mRNA downstream 307768 1966493 ~ 2175927 (-) False ptprga
XM_043252529.1 mRNA downstream 520085 1953550 ~ 1963610 (-) True cse1l
XM_043251246.1 mRNA downstream 530598 1950040 ~ 1953097 (-) False LOC122353511
XM_043252685.1 mRNA upstream 323056 2807984 ~ 2811364 (-) True LOC122354490
XM_043252686.1 mRNA upstream 328424 2813352 ~ 2816128 (-) False LOC122354491
XM_043252687.1 mRNA upstream 328424 2813352 ~ 2816128 (-) True LOC122354491
XM_043252510.1 mRNA upstream 334660 2819588 ~ 2830067 (-) True LOC122354336
XM_043252511.1 mRNA upstream 455212 2940140 ~ 2942199 (-) True LOC122354337
XR_006252158.1 other downstream 606280 1877275 ~ 1877415 (-) True LOC122354708
XR_006252157.1 other downstream 608906 1874649 ~ 1874789 (-) True LOC122354706
XR_006252159.1 other downstream 611390 1872166 ~ 1872305 (-) True LOC122354709
XR_006252143.1 other downstream 614011 1869547 ~ 1869684 (-) True LOC122354692
XR_006252144.1 other downstream 616286 1867270 ~ 1867409 (-) True LOC122354693
unassigned_transcript_1621 other upstream 216280 2701208 ~ 2701279 (-) True trnap-cgg_2
unassigned_transcript_1622 other upstream 216880 2701808 ~ 2701885 (-) True trnaf-gaa_2
unassigned_transcript_1623 other upstream 217868 2702796 ~ 2702867 (-) True trnap-ugg_6
unassigned_transcript_1624 other upstream 218467 2703395 ~ 2703472 (-) True trnaf-gaa_3
unassigned_transcript_1625 other upstream 218631 2703559 ~ 2703632 (-) True trnai-aau_3

Expression Profile