med17 (med17)


Basic Information

Item Value
gene id med17
gene name med17
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 8018401 ~ 8024176 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259761.1
GGCCACGCCTCGCGAGATTTGAGCAGCCGCTCTCGTTCGCGCAGCTGAACGGCGCAGAATCCTTTAGCTTGAGAactacaacaaaaatacaaagaacaGCAGAAAACCGAGTCTCTTCTTAGATtgtgtgaTCAGAGCTCAGCGGTCATCATGATGTCCGGGGGTCCGGCGGTGCGGGTCAGCATCGAGTCTCAGTGTGAGCGGCAGGTTCAGGAGGTGTCTCTGGACGGTCTGGAGACGTACGTGCCTCCGCTCTCCATGTCTCAGAACCTGGCCAAGCTGGCGCAGCGCATCGACTTCGAGCAGAGCTCCGACTCTGAGCAGGACGGGCTGGAGCGGGAGAGCCGGGAGCCGTGGGGCAAGCCGGAGCTGGAGGAGGACGaggGTGCGGTGAAGTTCCAGCCGTCGCTCTGGCCGTGGGACTCGGTGCGTAATAACCTGCGCAGCTCTCTCACAGAGATGTGTGTGCTGCACGACGTGCTCAGTGTGCTCAAGGAGAAGAAGTACATGGCCCTCGACCCCGTGTCCCAGGACCCCAGCGGCACCAAGACCCCGCAGGTGTTCCAGCTGATCAGCAAGAAGAAGTCTCTGGCCACGGCCGCCCAGCTGCTGCTGAAAGGAGCGGAGAAACTGACCAAGTCTCTGGCCGAGAACCAGGAGCAGCGCAGACAGAGAGACTTTAACTCGGAGCTGCTGCGCCTGCGCTCTCAGTGGAAGCTGCGCAAGGTCGGGGACAAGATCCTGGGCGACCTGAGCTACCGCAGCGCGGGCTCTCTGTTCCCTCATCACGGCACGTTCGAGGTCATCAAGAACACGGACATCGACCTGGACAAGAAGATCCCTGACGATTACTGTCCGCTCGACGTGCAGATCCCCAGCGACCTGGAGGGGTCGGCGTACATCAAGGTGTCCATCCAGAAGCAGTCCCCGGACATCGGAGACCTCGGCACAGTCAATCTCTTCAGAAGACAGCTTAAAGCCAAACCCGCTTCTCAGATGTGGCACCTGAAGCTGGAGGCGGCTCAGAATGTGCTGCTGTGTAAAGAGATCTTCGCTCAGCTCTCACGTGAAGCGGTTCAGATCAAATCACAGATTCCTCACATCGTCGTCAAGAACCAGATCATCTCACAGCCCTTCCCTGgtctGCAGCTGTCCATCTCTCTGTGTCACTCCACTGGAGAGAAGAGAAGTCAGAGAGCGTCTCCAGACAGGAGCAAGCCAGACGATCATCTCTATGTGTTGGAACACAACCTGCACCAGCTGATCCGAGAGttccACAAGCAGACGCTGAGCTCGGTGGTCATGCCTCACCCGGCCAGCGCTCCGTTCGGTCACAAGCGCTTGCGGCTGGCGGGCCCCATGGCCTACGACAAGGCCGAGATCGGCTCCCTGCAGCAGAGCGAGGGCCTCCTGGAGAAGATCATCAAACAGGCCAAGCACATCTTCCTGAGGAGCAGGACGGCGCGCACCATCGACAGCCTGGCCAGTCGGATCGAGGACCCTCAGATACAGGCTCACTGGTCCAACATCAACGACGTGTACGAGTCCAGCGTCAAAGTGCTCATCACCTCGCAGGGATACGAGCAGATCTGCAAGTCCATCCAGCTGCAGCTGAACATCGGAGTGGAGCAGATCAGGGTCGTGCATCGAGACGGACGCGTCATCACCCTCTCACACCAGGAGCAGGAGCTGCAGGACTTCCTGCTGtcacagaTGTCGCAGCATCAGGTTCACGCTGTGCAGCAGCTGGCTAAAGTCATGGGCTGGCACGTGTTGAGTTTCAGTAATCACGTGGGCCTCGGCCCCATTGAGAGCATCGGGAACGCCTCCGCCATCACAGTCGCGTCTCCCAACGGAGAGTACTCCATCTCAGtgCGTAACGGTCCGGAGAGCGGATGCAAGGTGCTGGTTCAGTTCCCTCGCAGTCAGGCCAAAGAGCTGCCCAAGAGCGACGTGGTGCAGGACGGCAAATGGACGCACCTGAGGGGTCCTCACAAGGAGGTGCACTGGGGCCGGATGGAAGGAAGAAACTTTGTTTACAAAATGGAGCTGCTGATGGCGGCCCTGACCCCGTGTCCCTAGAGCCCGCCGGGGCCTTCACTGTCTGCTCATGCTCTGCTTCGTTTTTCTAAGAAAAGGCCAGAAACGGCCaaaaaaaactagtttaaaataaaatatttgtacttgCA

Function

symbol description
med17 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Human ortholog(s) of this gene implicated in infantile cerebral and cerebellar atrophy with postnatal progressive microcephaly. Orthologous to human MED17 (mediator complex subunit 17).

NR:

description
mediator of RNA polymerase II transcription subunit 17

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15133 MED17; mediator of RNA polymerase II transcription subunit 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259761.1 True 2189 mRNA 0.58 13 8018401 8024176

Neighbor

gene id symbol gene type direction distance location
trim59 trim59 coding downstream 19174 7995583 ~ 7999227 (-)
ift80 ift80 coding downstream 38855 7960083 ~ 7979546 (-)
si:dkeyp-97b10.3 LOC107750093,LOC107551284,LOC107702998,LOC107701299,LOC107720419,LOC107577739 coding downstream 67189 7934255 ~ 7951212 (-)
lxn lxn,LOC107573187,LOC107573184 coding downstream 209604 7798162 ~ 7808797 (-)
aadac aadac,LOC107750087,LOC107551291,LOC107720424,LOC107572522 coding downstream 278537 7727802 ~ 7739864 (-)
LOC122358760 LOC107551275,LOC107750107,LOC107720462,LOC107572376,LOC107689293,LOC107663740 coding upstream 328154 8352330 ~ 8381497 (-)
trappc6bl trappc6bl,LOC107678240,LOC107684201,LOC107758819,LOC107749664,LOC107561377 coding upstream 505360 8529536 ~ 8533296 (-)
si:ch211-116o3.5 LOC107684197,LOC107561376,LOC107758471,LOC107678253,LOC107749643 coding upstream 509522 8533698 ~ 8539752 (-)
LOC122359137 pnkp,LOC107561379,LOC107758514,LOC107672387,LOC107749649,LOC107678254,LOC107560617 coding upstream 738867 8763043 ~ 8769975 (-)
si:dkey-243k1.3 si:dkey-243k1.3,LOC107672362 coding upstream 751469 8775645 ~ 8779441 (-)
G104692 NA non-coding downstream 1964 8014228 ~ 8016437 (-)
G104714 NA non-coding downstream 5364 8004553 ~ 8013037 (-)
G104711 NA non-coding downstream 17634 7999777 ~ 8000767 (-)
G104696 NA non-coding downstream 59503 7958555 ~ 7958898 (-)
G104682 NA non-coding downstream 90807 7913465 ~ 7927594 (-)
G104732 NA non-coding upstream 89874 8114050 ~ 8115136 (-)
G104749 NA non-coding upstream 224459 8248635 ~ 8254043 (-)
G104751 NA non-coding upstream 227677 8251853 ~ 8254993 (-)
G104753 NA non-coding upstream 243346 8267522 ~ 8267739 (-)
G104757 NA non-coding upstream 254966 8279142 ~ 8279684 (-)
G104695 LOC107750114,LOC107701289,LOC107702996,LOC107720420,LOC107570341 other downstream 60170 7957836 ~ 7958231 (-)
G104628 NA other downstream 378062 7639644 ~ 7640339 (-)
G104603 LOC107703035,LOC107750119,LOC107551239 other downstream 446311 7569846 ~ 7572090 (-)
mmp28 mmp28 other downstream 899115 7111256 ~ 7119286 (-)
G104011 NA other downstream 1871884 6146173 ~ 6146517 (-)
nipsnap2 gbas,LOC106581053 other upstream 20646 8044822 ~ 8050710 (-)
zgc:114130 zgc:114130,LOC107758457,LOC107749642,LOC107678256,LOC107560624,LOC107684198,LOC107561367 other upstream 486206 8510382 ~ 8513459 (-)
LOC122359140 pnkp,LOC107561379,LOC107758514,LOC107672387,LOC107749649,LOC107678254,LOC107560617 other upstream 633512 8657688 ~ 8662864 (-)
LOC122359046 camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other upstream 1014720 9038896 ~ 9046115 (-)
G105022 LOC107672415,LOC107582616,LOC107588772,LOC107694024,LOC107752388 other upstream 1410250 9434426 ~ 9436797 (-)

Expression


Co-expression Network