LOC122359137 (pnkp,LOC107561379,LOC107758514,LOC107672387,LOC107749649,LOC107678254,LOC107560617)


Basic Information

Item Value
gene id LOC122359137
gene name pnkp,LOC107561379,LOC107758514,LOC107672387,LOC107749649,LOC107678254,LOC107560617
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 8763043 ~ 8769975 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259328.1
GGTTGTCGTCTGTGAATGGAGATGCAGTGCACACTAGAAAGTGCGAATGGAGCTCGGGTGGACCTGGCAGATGATCGAGCTTTAATGTTAGGTCGAGGCCCTGAAACCAGAATCACGGACAAGAAGTGCTCAAGGCATCAGGTCAAACTTGTGGCCAACTATGCCAAACAGGAAGTACTGGTTACGCAGCTCGGGCCCAACCCTTCTTCTCTGGACGGTCAGTGTTTGGGACGAGGCGAGTCTGGATGTTTGACACCTGGTTGCACGCTGTATCTAGTCAATCAGTCCCACCCGTTTACTGTGCAATTTGTGGGAAAATCAAAAGAAAGGTCGTTCTCTCCTCAGAAGAAAGGAAAAGCAGCAAATGACAGCAGAGACGGACAGAAAAGCTCAAACGAAGGGTCAGGCCCCAAGAGGAACATCCaggattatttttctaaatccCCTAAAAAGGTGACAAAACGACCTCACAGCTCAGAGGATGACGTTCCTCCAATGAAACGAGGACGAAATTATGAAGATGAGGAGACCTCGGCAGAAGAAAAGCTTAAGCAGTTACAAGCTCTTGCACAGAAAGAGTGTAATAAGCTAAACTCACCATCAGTCAAAGCCACTGCTTCATCTTCCACTTGTTCTCAGAATCACTGGCAACAAATCGGCAGCCTTCTGCTGTTCACCGCGGCCGGGGTTCCAGATAGCTCCAAAGTTGCAGGGTTTGACGTTGACGGCTGCATTATCACTACAAAGTCTGGAAAAGTATTTCCCACGAGTCCAGATGACTGGAGGATTCTCTTCCCTGAGATTCAGCCCAGACTGGCCAGCCTTTTGAAGAAAGGATACAAGGTGGTGTTTTTCACCAATCAGATGGGTATTTCTAGAGGCAAGCTCAGACCAGAGGTGTTCAAGTCAAAAGTTGAGGATATTCTACAGACACTTCAATTACCCATCCAGgtatttgCTTCCACAGCCCCTGGTATATACAGGAAGCCTGTTATAGGGATGTGGGAACATCTGTGTGAGAAGGCGAATGGTGGCGTGGCTGTAGATGTGTCACAGAGCTTCTATGTGGGAGATGCAGCGGGACGTCCCGCTAACTGGGCAccaggaaaaaagaagaaagacttCTCTTGCAGTGACAGACTATTTGCCCTCAACATTGGTCTTCAGTTTCACACACCAGAGGAATACTTCTTGGGCTGGAAACCTGCTCAGTTCAGCTTGCCAGAATTTGAtcctAGGAAATTAGATTCTAAAAGGCGTCTTTACGATCCTCCAGATGCGTCCCTCACATCCACCAAGCAGGAAGTCATTGTAGCGGTGGGATTTCCTGGATcaggcAAATCAACATTTTTCCAAACACACATCGTTCCAAAGGGCTATGTGTATGTGAACAGGGACATACTCGGCTCCTGGCAGCAGTGCGTTTCAGCCTGTGAACGAGCTCTAAAGGAAGGCCGAAGCGTTGCAGTGGACAACACTAACCCTGACCCCGAGTCTAGAAAAAGATATATAGATGTCAGTCAAAGCGCTGGAGTTCTCTGCAGGTGTTTCAACTTCACAGCGAGTCTGGAACAAGCAAAGCATAACAACAGGTTTCGGGAGATGGTTCCTTCTTCCGTCAAGCATGTTCCTGTCAATGACATGGTGATTCACAGCTACAAGAAGAAGTTTGTGGCACCCAGTTTGTCTGAGGGCTTCTCTGAAATCCTGCAGATTCATTTTGTGCCGAGTTTTAGTGAAAAAAGATCCGAGTTCCTCTTCAGGCAGTTCTCTGAGGGCTAAGCATGAAGATGAGctaaagatgaagaaaaaaatgcctACTGAATAAAAATTAGACTAGTCAATTAATAGACAATACAacactaatttaatttagtgtgCTATACTGTCTTCCACTTAAGTTCACGCCtgtctttaatttgtttttaaatgtgttgtttgagAAACTTGTTCATAGCTGCTAAAATTGACCTGTTGTTATGAAGACTGCCTTATAATACAGGTTTTATAAATTGAGGAAACAATTGCTTGTCTTATCGTGTCagactgaataaaaacaattatcaaTGTTAA
>XM_043259329.1
GGTTGTCGTCTGTGAATGGAGATGCAGTGCACACTAGAAAGTGCGAATGGAGCTCGGGTGGACCTGGCAGATGATCGAGCTTTAATGTTAGGTCGAGGCCCTGAAACCAGAATCACGGACAAGAAGTGCTCAAGGCATCAGGTCAAACTTGTGGCCAACTATGCCAAACAGGAAGTACTGGTTACGCAGCTCGGGCCCAACCCTTCTTCTCTGGACGGTCAGTGTTTGGGACGAGGCGAGTCTGGATGTTTGACACCTGGTTGCACGCTGTATCTAGTCAATCAGTCCCACCCGTTTACTGTGCAATTTGTGGGAAAATCAAAAGAAAGGTCGTTCTCTCCTCAGAAGAAAGGAAAAGCAGCAAATGACAGCAGAGACGGACAGAAAAGCTCAAACGAAGGGTCAGGCCCCAAGAGGAACATCCaggattatttttctaaatccCCTAAAAAGGTGACAAAACGACCTCACAGCTCAGAGGATGACGTTCCTCCAATGAAACGAGGACGAAATTATGAAGATGAGGAGACCTCGGCAGAAGAAAAGCTTAAGCAGTTACAAGCTCTTGCACAGAAAGAGTGTAATAAGCTAAACTCACCATCAGTCAAAGCCACTGCTTCATCTTCCACTTGTTCTCAGAATCACTGGCAACAAATCGGCAGCCTTCTGCTGTTCACCGCGGCCGGGGTTCCAGATAGCTCCAAAGTTGCAGGGTTTGACGTTGACGGCTGCATTATCACTACAAAGTCTGGAAAAGTATTTCCCACGAGTCCAGATGACTGGAGGATTCTCTTCCCTGAGATTCAGCCCAGACTGGCCAGCCTTTTGAAGAAAGGATACAAGGTGGTGTTTTTCACCAATCAGATGGGTATTTCTAGAGGCAAGCTCAGACCAGAGGTGTTCAAGTCAAAAGTTGAGGATATTCTACAGACACTTCAATTACCCATCCAGgtatttgCTTCCACAGCCCCTGGTATATACAGGAAGCCTGTTATAGGGATGTGGGAACATCTGTGTGAGAAGGCGAATGGTGGCGTGGCTGTAGATGTGTCACAGAGCTTCTATGTGGGAGATGCAGCGGGACGTCCCGCTAACTGGGCAccaggaaaaaagaagaaagacttCTCTTGCAGTGACAGACTATTTGCCCTCAACATTGGTCTTCAGTTTCACACACCAGAGGAATACTTCTTGGGCTGGAAACCTGCTCAGTTCAGCTTGCCAGAATTTGAtcctAGGAAATTAGATTCTAAAAGGCGTCTTTACGATCCTCCAGATGCGTCCCTCACATCCACCAAGCAGGAAGTCATTGTAGCGGTGGGATTTCCTGGATcaggcAAATCAACATTTTTCCAAACACACATCGTTCCAAAGGGCTATGTGTATGTGAACAGGGACATACTCGGCTCCTGGCAGCAGTGCGTTTCAGCCTGTGAACGAGCTCTAAAGGAAGGCCGAAGCGTTGCAGTGGACAACACTAACCCTGACCCCGAGTCTAGAAAAAGATATATAGATGTCAGTCAAAGCGCTGGAGTTCTCTGCAGGTGTTTCAACTTCACAGCGAGTCTGGAACAAGCAAAGCATAACAACAGGGTATATAGAGGAGTCTTAACAGCGTGCAATATTTTCGGGAGATGGTTCCTTCTTCCGTCAAGCATGTTCCTGTCAATGACATGGTGATTCACAGCTACAAGAAGAAGTTTGTGGCACCCAGTTTGTCTGAGGGCTTCTCTGAAATCCTGCAGATTCATTTTGTGCCGAGTTTTAGTGAAAAAAGATCCGAGTTCCTCTTCAGGCAGTTCTCTGAGGGCTAAGCATGAAGATGAGctaaagatgaagaaaaaaatgcctACTGAATAAAAATTAGACTAGTCAATTAATAGACAATACAacactaatttaatttagtgtgCTATACTGTCTTCCACTTAAGTTCACGCCtgtctttaatttgtttttaaatgtgttgtttgagAAACTTGTTCATAGCTGCTAAAATTGACCTGTTGTTATGAAGACTGCCTTATAATACAGGTTTTATAAATTGAGGAAACAATTGCTTGTCTTATCGTGTCagactgaataaaaacaattatcaaTGTTAA

Function

symbol description
pnkp Predicted to enable double-stranded DNA binding activity; polydeoxyribonucleotide 5'-hydroxyl-kinase activity; and polynucleotide 3'-phosphatase activity. Predicted to be involved in DNA repair and nucleotide phosphorylation. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2B2 and microcephaly, seizures, and developmental delay. Orthologous to human PNKP (polynucleotide kinase 3'-phosphatase).

NR:

description
PREDICTED: bifunctional polynucleotide phosphatase/kinase-like

GO: NA

KEGG:

id description
K08073 PNKP; bifunctional polynucleotide phosphatase/kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259328.1 False 2073 mRNA 0.45 17 8763043 8769975
XM_043259329.1 True 2105 mRNA 0.45 17 8763043 8769975

Neighbor

gene id symbol gene type direction distance location
si:ch211-116o3.5 LOC107684197,LOC107561376,LOC107758471,LOC107678253,LOC107749643 coding downstream 223291 8533698 ~ 8539752 (-)
trappc6bl trappc6bl,LOC107678240,LOC107684201,LOC107758819,LOC107749664,LOC107561377 coding downstream 229747 8529536 ~ 8533296 (-)
LOC122358760 LOC107551275,LOC107750107,LOC107720462,LOC107572376,LOC107689293,LOC107663740 coding downstream 381546 8352330 ~ 8381497 (-)
med17 med17 coding downstream 738867 8018401 ~ 8024176 (-)
trim59 trim59 coding downstream 763816 7995583 ~ 7999227 (-)
si:dkey-243k1.3 si:dkey-243k1.3,LOC107672362 coding upstream 5670 8775645 ~ 8779441 (-)
dpf1 dpf1,LOC107672425,LOC107561370,LOC107749650,LOC107678238,LOC100004713 coding upstream 86593 8856568 ~ 8909306 (-)
numbl numbl,LOC107561381,LOC107672402,LOC107560628 coding upstream 153356 8923331 ~ 8947415 (-)
coq8b coq8b,LOC107678251,LOC107749653 coding upstream 193529 8963504 ~ 8972321 (-)
slc5a2 slc5a2,LOC107678242 coding upstream 211505 8981480 ~ 8987688 (-)
G104809 LOC107672361,LOC107758746 non-coding downstream 34056 8716395 ~ 8728987 (-)
G104812 clca4,LOC107749647,LOC107678235,LOC107678236,LOC107749648,LOC107678237 non-coding downstream 61001 8595677 ~ 8702042 (-)
G104808 LOC107758751,LOC107672361,LOC107758746,LOC107561373,LOC107672380 non-coding downstream 84720 8586628 ~ 8678323 (-)
G104794 NA non-coding downstream 266437 8496392 ~ 8496606 (-)
G104780 cyp2y3,LOC107689291,LOC107551273,LOC107718919 non-coding downstream 347275 8401270 ~ 8415768 (-)
LOC122359047 NA non-coding upstream 262624 9032599 ~ 9038328 (-)
G104922 NA non-coding upstream 370083 9140058 ~ 9140422 (-)
G104936 NA non-coding upstream 464895 9234870 ~ 9235087 (-)
LOC122358921 NA non-coding upstream 494520 9264495 ~ 9295511 (-)
G104975 NA non-coding upstream 622058 9392033 ~ 9392240 (-)
LOC122359140 pnkp,LOC107561379,LOC107758514,LOC107672387,LOC107749649,LOC107678254,LOC107560617 other downstream 100179 8657688 ~ 8662864 (-)
zgc:114130 zgc:114130,LOC107758457,LOC107749642,LOC107678256,LOC107560624,LOC107684198,LOC107561367 other downstream 249584 8510382 ~ 8513459 (-)
nipsnap2 gbas,LOC106581053 other downstream 712333 8044822 ~ 8050710 (-)
G104695 LOC107750114,LOC107701289,LOC107702996,LOC107720420,LOC107570341 other downstream 804812 7957836 ~ 7958231 (-)
G104628 NA other downstream 1122704 7639644 ~ 7640339 (-)
LOC122359046 camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other upstream 268921 9038896 ~ 9046115 (-)
G105022 LOC107672415,LOC107582616,LOC107588772,LOC107694024,LOC107752388 other upstream 664451 9434426 ~ 9436797 (-)
G105059 NA other upstream 782659 9552634 ~ 9555787 (-)
dynll2a dynll2a,LOC107554284,LOC103397138 other upstream 993896 9763871 ~ 9796923 (-)
atf5b atf5b,LOC107582581,LOC107597512,LOC107717185,LOC107659920,LOC107701416,LOC107713463 other upstream 1742656 10512631 ~ 10514062 (-)

Expression


Co-expression Network