G104812 (clca4,LOC107749647,LOC107678235,LOC107678236,LOC107749648,LOC107678237)


Basic Information

Item Value
gene id G104812
gene name clca4,LOC107749647,LOC107678235,LOC107678236,LOC107749648,LOC107678237
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 8595677 ~ 8702042 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU154755
TCGCACTACAAAAATCAACAATAGTATCCATTACAAAAATCATTTGGTTGGCTGAGAAACAGAAACATGtattctaaaaattaaaatattgtacagAATAATTGCAAAACTTTTGTAATGccattttatgtttgtgtttatttgtaaagttACGTTACAGCTTAAAGGTGTGAGTCTCGTACATTTAAACAGTATTATTGTACTTTAACATAATAGTAAGCACCTACCTAAATTGAATTATGCCGTCTCCTCCAAAAAGGCTTTACTTCAGCCCAGGTGTCCGTTCTTTGTGACTTTATTAATACATCTGAGATGATTTGAAATATGCCGGATCTTCTAATCCCGATAGCTGCCTTCTAGGGTAATAGATTAAAATATCTGCATTAAATTGTCTAGGATTACTCGGTTTCTCTTTTCTTCCAAAAAGGGCAGATATATAGATACTGGAAATCACGATCAACAGCGCAGCGATTGGCTGACGGCAAACCAACACAAACAGGGGAAGTCCCCCGGATGTTGCGAAAGTCTGTTTAGGTCCCAGGACGTTCGCTGACTAATTTGGTCCGTTCACATTTGGTCCGCTTTGTAAAGTTCGCTGACGGTCTTTTTGAGGAAATTCGTCCGAACGTCCCGGTTTCGTCCTTTCTGTCATTTCCATAAAACAACACTTGATAAATCCAGTTTTCCCATACTTGGGCTTTTATCATCAAACCTAACACCTTGCAACTCagacaaattaaatacaaaattaaactgaaatataaaccCAAATtggattttaatgcaaaatgcaaaaataaataaataattacgtataatgaataaataaattgcagaTTGATAGcgttattagtaatattattttaatagtataaataatgcattttaattcattagaaaaattatttttaaacatttaatcattttcatttttggaaaaaaagaaaataggtgTAGCTTCTGTATTCAAAGATGTCATCAAATTACGAGtctgttttcagcatttatacATCAATAAAAGCTATGCCCTTCAATATATACTTGAACATATAGGCTACaattcattcatgcatgaagaaaatataaaatggaaTCTCTAATGTGGACTGATGCAGCCAAGGAATGATACATTTCCTCAGACACGGCCTTGAGTTTCCCTTTAGTCCCCTAAAAATCCCAAATGGCTGCTGCACATCCTGTGAACGTCCTCATGACGTCCTCGCAACGtcctggggtttttttttggtagcaGGGAAAACAACAATGTGATGACATTATACCATAAAAAGACACCTGGCGAAAAACGTGTTACATTTCTGGCCttttataagaaaacaaaagtacataaaTGTTATACTAGATAAATTAACTgtgcactgtttttatttatttaaaaaaaaaaaaaattccgcttaatgttttgtacattattcaaaatttatattcacaatttcCAGTATTTGTAcatgctttaatttttattagcaattcatttcattttctcttaCGTGGCAGTTGTTGCTACGTGGCAGCATTAATTAAAGTTTCTTAAGGGTCAGGATCATGTTATCTGCATCTCCCATAATATCTGTCACCACCCAAATTAATACACGCCTCAGATTAACTATAGTATGTGTGTAAGACTCCTATACAGTTAtacaattgttttattattaataaatatttcaatgagTAAACCTGGCTGTGTCTATAGTCTTATAGATTAcacaacattattatattattcgtcaatacattttttaaattactgtcCCTGGATCTGTAGGATACTCTTGTAATAATGTAGTTAATAATTCTGCTTAAAAAGATGCAATCTAATCCTGTTTACATGAAATTAGCCTGCTTCCAAACAGGTCCAAGCTAACTGACCTGTTGCTATGACAGCAAGTCCGGGATGAACCTCGAAGAACCAAACACTACAAGATCAGGCAAAATCGTCAACAATTAAGTTAGCAACATATGAACAACGAGCCCCAGGTTAAGTTCTTCATGGCTCTGGTAGCGATACAAAACTTATTACGTATGTATATACCTCATTTATAAGATTATACATTACTACACTTAGTTTggtattgttttaaacaatgttCTAAAGCTGTTAGttgtacataatatttatttaacgtTCTTTTGTATCAGACTGTTAATGCCACTTTACTTCCAGCAGAGATTTTTCTGCGTTTCACTGCCCATGTGGTTACAGCAACAATAACGCATATGACCATAGtaaccacacacacagaaataacaaGAACTGTCAAATTCATTCCTGGATTTGATATTCCTGGGTATTTTGTACCAGGGACGATCTTTGAAACTTGAGCAATGTTGGAGATTTcagattttgcattttgttcatCATCTGACTGAACTGCAAAGAAGAGCGTGGTGCCATTTTGGATTGGGAAACTGAGATTGAATGAATGTTGTTCAACTGATCCAGCCTCCTGAGGTGAGACAGCAGTTGTGTTGATTTCATGACTATTGCTAAAGTTGTGTCGGAGCATATCAAGGTCAAAACTCC

Function

symbol description
clca4 Predicted to enable intracellular calcium activated chloride channel activity and ligand-gated ion channel activity. Predicted to be involved in ion transmembrane transport. Predicted to act upstream of or within chloride transport. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: calcium-activated chloride channel regulator 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154755 True 2545 lncRNA 0.34 2 8595677 8702042

Neighbor

gene id symbol gene type direction distance location
si:ch211-116o3.5 LOC107684197,LOC107561376,LOC107758471,LOC107678253,LOC107749643 coding downstream 55925 8533698 ~ 8539752 (-)
trappc6bl trappc6bl,LOC107678240,LOC107684201,LOC107758819,LOC107749664,LOC107561377 coding downstream 62381 8529536 ~ 8533296 (-)
LOC122358760 LOC107551275,LOC107750107,LOC107720462,LOC107572376,LOC107689293,LOC107663740 coding downstream 214180 8352330 ~ 8381497 (-)
med17 med17 coding downstream 571501 8018401 ~ 8024176 (-)
trim59 trim59 coding downstream 596450 7995583 ~ 7999227 (-)
LOC122359137 pnkp,LOC107561379,LOC107758514,LOC107672387,LOC107749649,LOC107678254,LOC107560617 coding upstream 61001 8763043 ~ 8769975 (-)
si:dkey-243k1.3 si:dkey-243k1.3,LOC107672362 coding upstream 73603 8775645 ~ 8779441 (-)
dpf1 dpf1,LOC107672425,LOC107561370,LOC107749650,LOC107678238,LOC100004713 coding upstream 154526 8856568 ~ 8909306 (-)
numbl numbl,LOC107561381,LOC107672402,LOC107560628 coding upstream 221289 8923331 ~ 8947415 (-)
coq8b coq8b,LOC107678251,LOC107749653 coding upstream 261462 8963504 ~ 8972321 (-)
G104794 NA non-coding downstream 99071 8496392 ~ 8496606 (-)
G104780 cyp2y3,LOC107689291,LOC107551273,LOC107718919 non-coding downstream 179909 8401270 ~ 8415768 (-)
G104777 si:ch1073-83n3.2,LOC107689292,LOC107551274,LOC107720429,LOC107572377 non-coding downstream 199348 8390340 ~ 8396329 (-)
G104769 NA non-coding downstream 265455 8329329 ~ 8330222 (-)
G104766 NA non-coding downstream 269255 8322192 ~ 8326422 (-)
G104809 LOC107672361,LOC107758746 non-coding upstream 14353 8716395 ~ 8728987 (-)
LOC122359047 NA non-coding upstream 330557 9032599 ~ 9038328 (-)
G104922 NA non-coding upstream 438016 9140058 ~ 9140422 (-)
G104936 NA non-coding upstream 532828 9234870 ~ 9235087 (-)
LOC122358921 NA non-coding upstream 562453 9264495 ~ 9295511 (-)
zgc:114130 zgc:114130,LOC107758457,LOC107749642,LOC107678256,LOC107560624,LOC107684198,LOC107561367 other downstream 82218 8510382 ~ 8513459 (-)
nipsnap2 gbas,LOC106581053 other downstream 544967 8044822 ~ 8050710 (-)
G104695 LOC107750114,LOC107701289,LOC107702996,LOC107720420,LOC107570341 other downstream 637446 7957836 ~ 7958231 (-)
G104628 NA other downstream 955338 7639644 ~ 7640339 (-)
G104603 LOC107703035,LOC107750119,LOC107551239 other downstream 1023587 7569846 ~ 7572090 (-)
LOC122359046 camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other upstream 336854 9038896 ~ 9046115 (-)
G105022 LOC107672415,LOC107582616,LOC107588772,LOC107694024,LOC107752388 other upstream 732384 9434426 ~ 9436797 (-)
G105059 NA other upstream 850592 9552634 ~ 9555787 (-)
dynll2a dynll2a,LOC107554284,LOC103397138 other upstream 1061829 9763871 ~ 9796923 (-)
atf5b atf5b,LOC107582581,LOC107597512,LOC107717185,LOC107659920,LOC107701416,LOC107713463 other upstream 1810589 10512631 ~ 10514062 (-)

Expression


Co-expression Network