RNA id: XM_043259328.1


Basic Information

Item Value
RNA id XM_043259328.1
length 2073
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC122359137
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 8763043 ~ 8769975 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTGTCGTCTGTGAATGGAGATGCAGTGCACACTAGAAAGTGCGAATGGAGCTCGGGTGGACCTGGCAGATGATCGAGCTTTAATGTTAGGTCGAGGCCCTGAAACCAGAATCACGGACAAGAAGTGCTCAAGGCATCAGGTCAAACTTGTGGCCAACTATGCCAAACAGGAAGTACTGGTTACGCAGCTCGGGCCCAACCCTTCTTCTCTGGACGGTCAGTGTTTGGGACGAGGCGAGTCTGGATGTTTGACACCTGGTTGCACGCTGTATCTAGTCAATCAGTCCCACCCGTTTACTGTGCAATTTGTGGGAAAATCAAAAGAAAGGTCGTTCTCTCCTCAGAAGAAAGGAAAAGCAGCAAATGACAGCAGAGACGGACAGAAAAGCTCAAACGAAGGGTCAGGCCCCAAGAGGAACATCCaggattatttttctaaatccCCTAAAAAGGTGACAAAACGACCTCACAGCTCAGAGGATGACGTTCCTCCAATGAAACGAGGACGAAATTATGAAGATGAGGAGACCTCGGCAGAAGAAAAGCTTAAGCAGTTACAAGCTCTTGCACAGAAAGAGTGTAATAAGCTAAACTCACCATCAGTCAAAGCCACTGCTTCATCTTCCACTTGTTCTCAGAATCACTGGCAACAAATCGGCAGCCTTCTGCTGTTCACCGCGGCCGGGGTTCCAGATAGCTCCAAAGTTGCAGGGTTTGACGTTGACGGCTGCATTATCACTACAAAGTCTGGAAAAGTATTTCCCACGAGTCCAGATGACTGGAGGATTCTCTTCCCTGAGATTCAGCCCAGACTGGCCAGCCTTTTGAAGAAAGGATACAAGGTGGTGTTTTTCACCAATCAGATGGGTATTTCTAGAGGCAAGCTCAGACCAGAGGTGTTCAAGTCAAAAGTTGAGGATATTCTACAGACACTTCAATTACCCATCCAGgtatttgCTTCCACAGCCCCTGGTATATACAGGAAGCCTGTTATAGGGATGTGGGAACATCTGTGTGAGAAGGCGAATGGTGGCGTGGCTGTAGATGTGTCACAGAGCTTCTATGTGGGAGATGCAGCGGGACGTCCCGCTAACTGGGCAccaggaaaaaagaagaaagacttCTCTTGCAGTGACAGACTATTTGCCCTCAACATTGGTCTTCAGTTTCACACACCAGAGGAATACTTCTTGGGCTGGAAACCTGCTCAGTTCAGCTTGCCAGAATTTGAtcctAGGAAATTAGATTCTAAAAGGCGTCTTTACGATCCTCCAGATGCGTCCCTCACATCCACCAAGCAGGAAGTCATTGTAGCGGTGGGATTTCCTGGATcaggcAAATCAACATTTTTCCAAACACACATCGTTCCAAAGGGCTATGTGTATGTGAACAGGGACATACTCGGCTCCTGGCAGCAGTGCGTTTCAGCCTGTGAACGAGCTCTAAAGGAAGGCCGAAGCGTTGCAGTGGACAACACTAACCCTGACCCCGAGTCTAGAAAAAGATATATAGATGTCAGTCAAAGCGCTGGAGTTCTCTGCAGGTGTTTCAACTTCACAGCGAGTCTGGAACAAGCAAAGCATAACAACAGGTTTCGGGAGATGGTTCCTTCTTCCGTCAAGCATGTTCCTGTCAATGACATGGTGATTCACAGCTACAAGAAGAAGTTTGTGGCACCCAGTTTGTCTGAGGGCTTCTCTGAAATCCTGCAGATTCATTTTGTGCCGAGTTTTAGTGAAAAAAGATCCGAGTTCCTCTTCAGGCAGTTCTCTGAGGGCTAAGCATGAAGATGAGctaaagatgaagaaaaaaatgcctACTGAATAAAAATTAGACTAGTCAATTAATAGACAATACAacactaatttaatttagtgtgCTATACTGTCTTCCACTTAAGTTCACGCCtgtctttaatttgtttttaaatgtgttgtttgagAAACTTGTTCATAGCTGCTAAAATTGACCTGTTGTTATGAAGACTGCCTTATAATACAGGTTTTATAAATTGAGGAAACAATTGCTTGTCTTATCGTGTCagactgaataaaaacaattatcaaTGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154751 lncRNA downstream 34056 8716395 ~ 8728987 (-) True G104809
TU154755 lncRNA downstream 61001 8595677 ~ 8702042 (-) True G104812
TU154749 lncRNA downstream 84720 8586628 ~ 8678323 (-) True G104808
TU154777 lncRNA downstream 103315 8657713 ~ 8659728 (-) False LOC122359140
TU154778 lncRNA downstream 103315 8657713 ~ 8659728 (-) False LOC122359140
XR_006252678.1 lncRNA upstream 262624 9032599 ~ 9038328 (-) True LOC122359047
TU154923 lncRNA upstream 370083 9140058 ~ 9140422 (-) True G104922
TU154948 lncRNA upstream 464895 9234870 ~ 9235087 (-) True G104936
XR_006252658.1 lncRNA upstream 494520 9264495 ~ 9295511 (-) True LOC122358921
TU155006 lncRNA upstream 622058 9392033 ~ 9392240 (-) True G104975
XM_043259333.1 mRNA downstream 100179 8657688 ~ 8662864 (-) True LOC122359140
XM_043259576.1 mRNA downstream 223291 8533698 ~ 8539752 (-) True si:ch211-116o3.5
XM_043259579.1 mRNA downstream 229747 8529536 ~ 8533296 (-) True trappc6bl
XM_043259578.1 mRNA downstream 230581 8529536 ~ 8532462 (-) False trappc6bl
XM_043258381.1 mRNA downstream 249584 8510382 ~ 8513459 (-) True zgc:114130
XM_043259331.1 mRNA upstream 5670 8775645 ~ 8779441 (-) True si:dkey-243k1.3
XM_043259142.1 mRNA upstream 86593 8856568 ~ 8909306 (-) False dpf1
XM_043259143.1 mRNA upstream 86593 8856568 ~ 8909302 (-) False dpf1
XM_043259141.1 mRNA upstream 86593 8856568 ~ 8907306 (-) False dpf1
XM_043259140.1 mRNA upstream 86593 8856568 ~ 8907306 (-) True dpf1
XR_006252682.1 other downstream 712333 8044822 ~ 8050710 (-) False nipsnap2
TU154597 other downstream 804812 7957836 ~ 7958231 (-) True G104695
TU154509 other downstream 1122704 7639644 ~ 7640339 (-) False G104628
TU154511 other downstream 1122704 7639644 ~ 7640339 (-) False G104628
TU154467 other downstream 1190953 7569846 ~ 7572090 (-) True G104603
unassigned_transcript_1962 other upstream 234444 9004419 ~ 9004492 (-) True trnat-agu_3
unassigned_transcript_1963 other upstream 241292 9011267 ~ 9011340 (-) True trnat-ugu_1
unassigned_transcript_1964 other upstream 241592 9011567 ~ 9011640 (-) True trnat-agu_4
unassigned_transcript_1965 other upstream 242823 9012798 ~ 9012871 (-) True trnat-cgu_2
unassigned_transcript_1966 other upstream 243118 9013093 ~ 9013166 (-) True trnat-agu_5

Expression Profile