RNA id: TU154511



Basic Information


Item Value
RNA id TU154511
length 638
RNA type TUCP
GC content 0.62
exon number 2
gene id G104628
representative False

Chromosome Information


Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 7639644 ~ 7640339 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GGCCGTCGAAGACGCCGTAGATGTCGGTCCGGCTCCGGTTGAGCGCGTCCGGGAGGACGTGGAAGCGGTCCTCCATGCGCTCCCTCCGGCCCTGGATGGAGTAGACCGCCGCGCCGCCGCTCCTGTACTGCCACGTCTTGGAGAACTCCTCGTGCAGCATCACCTCGCTGTGCATCATCTCCGCCACCCGGCCCTTCACCAGGCTGACGGCGTCGCGGCTGGAGCGCAGGATGCTCTTCACCTCGAGCACGCTCCAGAGAGCCAGGCTGCCGCCGAGGAGCAGCAGGGTCTGGGGCCGCAGCAGCAGACAGCGCGCGGTGCGAGCCAGCAGAGCCAGCGGACTcatgctttcacacacacacacacacacacacacacacacacacacactcactaaacTAATGACGGCAGCGCATCACAGACaggctctctcgctctcctccGCTGCGCTAATGACGCGTGTTCATCAGAAACCCGTCCGTGTCAACATTCCCTTCGAAGATGATCAGCGCGCGCAGTTTCCTCTCTTTATCAGATGACAGCCAGACGCAGCGCTCGTTTGccttaagaaaatgaaaaacaaatgccGCGTTGAGTTCCCCGACGCGGCGGCGCGGGCAGGTGTTCTGTATAGCGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU154492 lncRNA downstream 22169 7617231 ~ 7617475 (-) True G104622
TU154474 lncRNA downstream 60289 7578418 ~ 7579355 (-) True G104607
TU154477 lncRNA downstream 61238 7577691 ~ 7578406 (-) False G104607
TU154460 lncRNA downstream 88759 7549934 ~ 7550885 (-) True G104597
TU154458 lncRNA downstream 92585 7545956 ~ 7547059 (-) True G104595
TU154517 lncRNA upstream 5087 7645426 ~ 7649710 (-) True G104634
TU154554 lncRNA upstream 139477 7779816 ~ 7805389 (-) False G104663
TU154555 lncRNA upstream 141244 7781583 ~ 7783581 (-) True G104664
TU154556 lncRNA upstream 141244 7781583 ~ 7783065 (-) False G104664
TU154560 lncRNA upstream 152578 7792917 ~ 7793498 (-) True G104666
XM_043259806.1 mRNA downstream 1879 7628677 ~ 7637765 (-) True nmd3
XM_043259805.1 mRNA downstream 1886 7628677 ~ 7637758 (-) False nmd3
XM_043259807.1 mRNA downstream 1900 7628677 ~ 7637744 (-) False nmd3
XM_043258478.1 mRNA downstream 24598 7606890 ~ 7615046 (-) True otol1b
XM_043259766.1 mRNA downstream 64192 7574565 ~ 7575452 (-) True dnajc30b
XM_043258835.1 mRNA upstream 40374 7680713 ~ 7684393 (-) True nudt8
XM_043258836.1 mRNA upstream 40842 7681181 ~ 7684393 (-) False nudt8
XM_043258840.1 mRNA upstream 63922 7704261 ~ 7709530 (-) False tagln
XM_043258838.1 mRNA upstream 63922 7704261 ~ 7709524 (-) False tagln
XM_043258837.1 mRNA upstream 63922 7704261 ~ 7709524 (-) True tagln
TU154467 other downstream 67554 7569846 ~ 7572090 (-) True G104603
TU154060 other downstream 520358 7114426 ~ 7119286 (-) False mmp28
TU153584 other downstream 1493127 6146173 ~ 6146517 (-) True G104011
TU153427 other downstream 1890305 5744532 ~ 5749339 (-) False pgm2l1
TU153319 other downstream 2200697 5438048 ~ 5438947 (-) True G103825
TU154597 other upstream 317497 7957836 ~ 7958231 (-) True G104695
XR_006252682.1 other upstream 404483 8044822 ~ 8050710 (-) False nipsnap2
unassigned_transcript_1962 other upstream 1364080 9004419 ~ 9004492 (-) True trnat-agu_3
unassigned_transcript_1963 other upstream 1370928 9011267 ~ 9011340 (-) True trnat-ugu_1
unassigned_transcript_1964 other upstream 1371228 9011567 ~ 9011640 (-) True trnat-agu_4

Expression Profile