RNA id: TU154467


Basic Information

Item Value
RNA id TU154467
length 2197
RNA type TUCP
GC content 0.41
exon number 2
gene id G104603
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 7569846 ~ 7572090 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTGTCTTTCTTTGAGAGAAAGTGAAGCAGTCCAAAAAGCTTATTTAGCAAACACggttttatgttaaaatgtcatttaagtttaaattacGTTCACACGAGTTGTAAGGGTTTATCAGTGACTCTGAAAAGAAATCATTCACTCATCTGCTCTGAAcatgtatgagtttctttctcctgttgaacataaaaaaagccTACTCTGAGAAACACtggcagccattgacttccatgggaaaaaaaatactatagaagtCGATGGCTgccagcaactgtttggtttgCAACAACTTTATAGAGAatcttttttttgggggggggtgaACTGTCCATCGATGAAGATCGGATGATGTTTAAAGCCCTTTGTGCaggaaaacatcacaaaaatgtCTCGCGCAAAAGTACGGTGACGTCCAATCAGCACAGCCCGTAAAAAGCCTCGTCTTCGTTGACACTTTCGGCCGTTATTTGAAAAATACCAAATAGACGAGTAATGAAAAACATCTGCTTTGTATAAATCAACCAAAAAAAGTACACCCCGATGTcctaaatgattaatattagaATAATGTTTCGCCAAACAGGTGAACATCATTAAACGTGATAAGGGTAAAGTTTGATTAGCTGAGAGACGCACATCAGACGGTCTCCTGAAGAAACTCCTCAGCTCTATGGTTCAGATCCAGAGAGGAGTCCCCTGATGAGGACCAGGACGTGAGAACTAGTAATGTTCTGGTTAACCGTTGCCAAACCCCATAAAACACCGCAGGAAACACAACTGAGAGTTCGATGCGTCTTTTTCCACCGATGCCTGGGAGATCATGGCATGACGTGTCGTGTATAAAGGAAGAGCAAATATACACCACCGAAATCATTCGAAACCTTGGAAttgtttttttacgttttaccTTTTCAgtacatttatgaaatataatcgCAATTAAAAACAGAGGTTTTCTGTGTGAATCTCCCGTGAAATAGAGTTTATTTCTGTGAGGAAAACGTCACGTGATGTTAAAGATAATGCTACTGGGCCGGTTTCAGCAGGACTGCAGGGGACTGATATGTGTGTCCATGCTGAGAGAGCTCTTAGATGCTTCTTAGATGCCTTCAAAGCCTTCTCCAGACAGCTTTCCACGCTCAACCTACAACAGCACTCCGGCGGGGCTCTCCATGCTACATGCTGTCTGCAGAAATCTATATAAAGCGTATAAACGTATAAAGCCACTTGAGGTCCCTAAAAATGATTGTGATCTTAGAGAAGAGTGTCTATATGCACATCAGATATGAATTATTGTCTGTCGTTGGTGTTATTCACTTTTTGAGTAGTATATACATTTTGAGTATTTAAAGATGAGATGGAAATGATTCTaatgctgctcaagaaacatttctgattattatcgatgttgaaTAGTTTTTGCAGCTTAGAAAACAATCACCATTCAAAAGATTGGggaaaattaatttatactCATATTAactaaagatgcattaaaataatcagtaCATAGCATTtataacgtatatatatatattaaataaatgctattttaaattggaacttttcattcatctgttaatcctgaaaaagaaaatggatcAAAAATATTTGGCAGCTCATCTGTCTTTAAcatcgataataataataataataataataataataataataataataaatgtttcttgaccatcagaattgttttttcataaaggagtaatgatgctgaaaattcatctgtgcgtcacagaaataaaaggaAGTTCAACAGATCTTCACATAGAAGCCgctgttttaaattctaataatatttcactaatttttactgcatttctggAGATGAACACAGCCCATCAGGAGAGGCGTCTTTCAATGGCACGCATCAGTCCTAAACGTTTAAAGCCACCCAAAGAGAGAGCGGCATCAGTAGAAGGAGTACTGGTTCTCCACAGCTCTAGTCCGGCGGGGGCCGTCGCTGTCGTGGTAGTCGTCGGCCCCCGCGGCCCCGGGCTCCAGCAGTCTCTCGGCGCTGCTGCTGCGGCTGTGCAGGCCGGCGCTCGGCTGAGCCATCGGAGACGAGGACGAGCTGGAGGACAGCGCTGCGTCCGGCGGAGGAGCGGAGCCCGAGAGCTGCTGCGTCGACTGGGCCTCGGCTCGACAGACGGGGGCGTCCCGCGGAGCGGCCGGGATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154460 lncRNA downstream 18961 7549934 ~ 7550885 (-) True G104597
TU154458 lncRNA downstream 22787 7545956 ~ 7547059 (-) True G104595
TU154452 lncRNA downstream 45738 7523826 ~ 7524108 (-) True G104589
TU154447 lncRNA downstream 56541 7510134 ~ 7513305 (-) True G104585
TU154431 lncRNA downstream 72587 7496986 ~ 7497259 (-) True G104572
TU154477 lncRNA upstream 5601 7577691 ~ 7578406 (-) False G104607
TU154474 lncRNA upstream 6328 7578418 ~ 7579355 (-) True G104607
TU154492 lncRNA upstream 45141 7617231 ~ 7617475 (-) True G104622
TU154498 lncRNA upstream 55323 7627413 ~ 7654183 (-) True G104626
TU154504 lncRNA upstream 67554 7639644 ~ 7640339 (-) False G104628
XM_043259445.1 mRNA downstream 31447 7535595 ~ 7538399 (-) True srprb
XM_043258900.1 mRNA downstream 187738 7375213 ~ 7382108 (-) False shox2
XM_043258899.1 mRNA downstream 187738 7375213 ~ 7382108 (-) True shox2
XM_043258642.1 mRNA downstream 336487 7160336 ~ 7233359 (-) False dock10
XM_043258641.1 mRNA downstream 336488 7160336 ~ 7233358 (-) True dock10
XM_043259766.1 mRNA upstream 2475 7574565 ~ 7575452 (-) True dnajc30b
XM_043258478.1 mRNA upstream 34800 7606890 ~ 7615046 (-) True otol1b
XM_043259806.1 mRNA upstream 56587 7628677 ~ 7637765 (-) True nmd3
XM_043259805.1 mRNA upstream 56587 7628677 ~ 7637758 (-) False nmd3
XM_043259807.1 mRNA upstream 56587 7628677 ~ 7637744 (-) False nmd3
TU154060 other downstream 450560 7114426 ~ 7119286 (-) False mmp28
TU153584 other downstream 1423329 6146173 ~ 6146517 (-) True G104011
TU153427 other downstream 1820507 5744532 ~ 5749339 (-) False pgm2l1
TU153319 other downstream 2130899 5438048 ~ 5438947 (-) True G103825
TU152826 other downstream 3753104 3816062 ~ 3816742 (-) True G103449
TU154509 other upstream 67554 7639644 ~ 7640339 (-) False G104628
TU154511 other upstream 67554 7639644 ~ 7640339 (-) False G104628
TU154597 other upstream 385746 7957836 ~ 7958231 (-) True G104695
XR_006252682.1 other upstream 472732 8044822 ~ 8050710 (-) False nipsnap2
unassigned_transcript_1962 other upstream 1432329 9004419 ~ 9004492 (-) True trnat-agu_3

Expression Profile