RNA id: TU154447


Basic Information

Item Value
RNA id TU154447
length 1791
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G104585
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 7510134 ~ 7513305 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTTTATTTGAGtaagacatttcatttttttcgtTCTTTCTTCGTTTGCTTTTTTCCCTTTAGGGTTTAAATCACACTCCGCTTACACGTACAACACGCTTTCATGCATGAAGGTAAATCATgctcaaacatacacacatgaaAAAGATCAATGAAACATGCACGCTGTGCTGCCGAACTCTGTGCATACATACAAGCATGAAACACTTAAGATAGGATTCTTTACAATAACATCCGGCTACtactatatttattcattttgtccTTTACTTCCCACTTTTAATTTGCAATTCAGTAACAGAACATgagaaaaacattagaaaaacaattaatattacaaatggtTCAAATCACAAATAGAAAATATCACACGGCAATCTTAAATCACACACACTAACCTGAGCAATTAAAAACCAGTTGATTGGTGCaacaatatatacaaaacaaaaagaaatgaactTATTCATTCACAGACTCATCACTCGTATACAGTTAGTAAGCTAGAAGATGCAGATGTGGCCACCATTAGTGCATTTGTGGGAACTGAAAGCATCTGGTAAGTACGGCTGATACACGGTGTTTTTGGAGGCCGTTGTAATTCCAGTTGCAAAAAACGTAGTCTTTCGTTGTTCCCTTTAGTGCATTTCAATCGACGCGCTTGGCAGTGTACGTTCTTCTTTAAAGTTTAGattttattaactgaaacaaTTATGTGGATAATTATACGGATCATTGCGTGTTAAATCTAAAATCTTAACAGCTGATATTTCCCCTAACAGCTCTACGGTCAGAACGCTACGTGAGGTAACTAAGTAGTGAGTATCactttcacagaaataaatattggGCTCATGGTGACTTTGATCTTGATTCAGTGTGCTACAAAGCGTGACAGGACCAATCCAAGGAGACACATCAGAGTACACCGGCTTCCCAAATGACTGAAGGCTGAAAATAACCAGAAAACAGGGATGTCCTTTTCACAGCGGTTTTCTCAATGCGTATGAGCATGATTTGGTATGAATATAAGCAAAGCAGGGAATATTTACCACTGTCTGGATTTCCCCCATCACTCGTTGAACCTGATGATTCTAAATACAAAGAGAGAAGGTATATACATTCATATGAATGCATATACATCCAGTTTAGTCATTCAAGAGCGTATAATAGTGAGAGAGAAATTATTCTTAATAGAAGAGAGAGcgtttgttttttgttgcttattaaacttaatttatcaaaattgtcattttaaacttttgcattttacatttaaggataaaaaaataaatatacaatgtatATTGTTTTGcgctattttcattttacagtgttttatttacttaaaatagatAAACTATTTGGCATCCCCATACGCTAAGAACACAATGCAGTgactataaatgtttatttaccaCTGCCTGTATTTCCTCCTCCTCTGGTTAATGGCCCTGAAgGATGAACGGTGAAAAGCGTCTCCATGCCCGCATGGATGTGGTCGGTCACATGGCAGTGAAGCAGCCATTGTCCAGGGCTTCCTGCGGTCATTTCTATGGTCTGAAACGTTCCTGGGAAGAGGTCGTACACATCAGCACGATGAGGATGATCCATCTGAGGGAGAGGAAATGAGAGCGTTTGAAACACTGCCTCTGTATTTATGCATTAGTGTGTTTCTGCTGGGGTGCTATTTGATATTacaacaaatatgtaaatataagcaGTGTTTCATATTCTGCTTTTCGAAGCAGTGCTTCCGTGTGATGAGATAAAACGACTATGCACTTGCAAAG

Function

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0002263 cell activation involved in immune response biological_process
GO:0042113 B cell activation biological_process
GO:0016444 somatic cell DNA recombination biological_process
GO:0002285 lymphocyte activation involved in immune response biological_process
GO:0016445 somatic diversification of immunoglobulins biological_process
GO:0016447 somatic recombination of immunoglobulin gene segments biological_process
GO:0002562 somatic diversification of immune receptors via germline recombination within a single locus biological_process
GO:0002312 B cell activation involved in immune response biological_process
GO:0045190 isotype switching biological_process
GO:0002366 leukocyte activation involved in immune response biological_process
GO:0002377 immunoglobulin production biological_process
GO:0002381 immunoglobulin production involved in immunoglobulin-mediated immune response biological_process
GO:0002440 production of molecular mediator of immune response biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0002200 somatic diversification of immune receptors biological_process
GO:0002204 somatic recombination of immunoglobulin genes involved in immune response biological_process
GO:0019724 B cell mediated immunity biological_process
GO:0002208 somatic diversification of immunoglobulins involved in immune response biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154431 lncRNA downstream 12875 7496986 ~ 7497259 (-) True G104572
TU154424 lncRNA downstream 19358 7490106 ~ 7490776 (-) True G104570
TU153959 lncRNA downstream 412067 7042394 ~ 7098067 (-) False G104252
TU153961 lncRNA downstream 424602 7042394 ~ 7085532 (-) True G104252
TU154033 lncRNA downstream 470942 7037726 ~ 7039192 (-) True G104314
TU154452 lncRNA upstream 10521 7523826 ~ 7524108 (-) True G104589
TU154458 lncRNA upstream 32651 7545956 ~ 7547059 (-) True G104595
TU154460 lncRNA upstream 36629 7549934 ~ 7550885 (-) True G104597
TU154477 lncRNA upstream 64386 7577691 ~ 7578406 (-) False G104607
TU154474 lncRNA upstream 65113 7578418 ~ 7579355 (-) True G104607
XM_043258900.1 mRNA downstream 128026 7375213 ~ 7382108 (-) False shox2
XM_043258899.1 mRNA downstream 128026 7375213 ~ 7382108 (-) True shox2
XM_043258640.1 mRNA downstream 292690 7160336 ~ 7217444 (-) False dock10
XM_043259445.1 mRNA upstream 22290 7535595 ~ 7538399 (-) True srprb
XM_043259766.1 mRNA upstream 61260 7574565 ~ 7575452 (-) True dnajc30b
XM_043258478.1 mRNA upstream 93585 7606890 ~ 7615046 (-) True otol1b
XM_043259806.1 mRNA upstream 115372 7628677 ~ 7637765 (-) True nmd3
XM_043259805.1 mRNA upstream 115372 7628677 ~ 7637758 (-) False nmd3
TU154060 other downstream 390848 7114426 ~ 7119286 (-) False mmp28
TU153584 other downstream 1363617 6146173 ~ 6146517 (-) True G104011
TU153427 other downstream 1760795 5744532 ~ 5749339 (-) False pgm2l1
TU153319 other downstream 2071187 5438048 ~ 5438947 (-) True G103825
TU152826 other downstream 3693392 3816062 ~ 3816742 (-) True G103449
TU154467 other upstream 56541 7569846 ~ 7572090 (-) True G104603
TU154509 other upstream 126339 7639644 ~ 7640339 (-) False G104628
TU154511 other upstream 126339 7639644 ~ 7640339 (-) False G104628
TU154597 other upstream 444531 7957836 ~ 7958231 (-) True G104695
XR_006252682.1 other upstream 531517 8044822 ~ 8050710 (-) False nipsnap2

Expression Profile