RNA id: XM_043258899.1


Basic Information

Item Value
RNA id XM_043258899.1
length 3955
RNA type mRNA
GC content 0.46
exon number 5
gene id shox2
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 7375213 ~ 7382108 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAACGATACACGCTCCTTTCGTATCACAACAGCAACAACTCACAGAAGAGCGCCATGAGCCGCCGAGCAGACAGAAGTCATCGACGTGGAGCTCATCGAGTCGAGCGCGGCAGGCAGGCGTTACCAATCAAACACGATCTCCGCTCGCTTTCCCCTTCTCCTCGCGATCGGGCAGGATTAGCACGAAATACGGTTATATTTCTCACCGTCATTTCATCACAAGACCTCGTTTAATTCTCAACACTAggattctgtttttgttttaagcgTTAAGCCGATGTGAGACGAGAAAGCGCGGATTTCgagaaaatatttcatatttttggaaCGCAGCCAATAATAGGCGGTCGGTTTcgtctatttaaaaataaaaaataagtatgaGGCAAACACAttgaggtaaaaaaataaataaataaataatataaatgtgaaacGACTTGAAGGTAAAACTTCTACTAGCCTACTTGGGGGCTTTTcttcttcatctttttttctagAAGTCAAACTGAGGTCTTAATAATTCCTAAGTGTTTACCGACGAGAAATGCTCACATTCAAAGATTTGCATCTCGTCTAAACATTCACACAAGCCGCCTAACCTAGATAGTCACCTTAAAACTGCGCCCTTGATATACGTGTAGCCTACGAACAGCCTCCTTGAAGAAAACCGATCATTATTAATaggtgttattattattattatattcgtGTATGTGAAGGGCGAAATGCTTAGCTCTTAGACTATTTTTTGCAGCGTTTCAAGCAAATAAACGCGTGCGTGCTTGAAAAACGTCTATACGCAAATATAAAAGGGGCACAAGATATATATTTGATTGTGATGTAATTATTAACAGTGAGATGACGAGAAGGTGTTTTGCAATTTATCAACAAAAGACGTGTTTTGTATGTAATTTACCTCCGAACTATtctagctttttttattattattattgttattgttattattactattcgCTTTTAAAGCTCAAACGCATTTATTTAGTAGGACGGCTGATTAAACGTATTGTGCAATCGTTTTACTAATTTTGTGCAATTAAAAGAGCGCAGGatctctatttttttatatatattgcaagTCATTAGGCGGCTGTTGCCAATAATAGAAACTCCCGAGtgctgaaatattaattaaacgggattttcaaaataatgaatatcTCTTGCACGCTTTCagacaatataaatacaaacccAGCGCGTTTAGCCCGTTTTGTCAATGCTTTACGAAGCTATCCGTTAGGGCTGTTATTACCAAGAACCTCTAATAAATGCGCTTTGACTAAATTGTTCAAATGAGTAATTTCGATTGAGATTCGACTCAACGTGTTCGTATCATGCTTCTGAAAAACACCTCATCGCTccaataaacacaaatgtgcggtgcaaaaataaatgtttaggtTAAATAATTAGCTCGCAGTGAAGCAAGCCTTGGAGCCGATTCGGGTTTTTATTTCTCGTCCGCGGGTCAGAATGAAATTCTTAATGATGTTGTTACTGCATGATCACAAAGTGCgtgttttttctttcccccTTCTCTTTGCTCCTCTCGTTATCTCTCCGGTTTTCCAGCTCGGATCAAACGGCGGCGGAATAAGATGCCCTTTTCAGTAGTTTTGGCCTCATCCCAGCATCATCATCGCCATCATCGCCATCGTCGTCGTCGCCATCCCCGGTGTTTCCAAACTCTAAGCAGTCGAGcttaatgacattaatttgcTCATCTTGTCAATCTCGGCCAATAGCAAGCACGGAAGGGTGATGTGGATCTGAAGGACAGATAAGGTTCCCCCACCCAGCCCGCGCCCAGCCCAGCCCGCCTCTGTGGGAAGGGGGCTCGTGGAGAGGAGCGCGGATCAAGGGGCAGACGCTTCGCCAAGTATAAATAGTGTGACTTCAATAGCGAACCGGCAGCGAGTCCGTACACCCCGCAACAAGAGGAATTGTCAAAGATCTCGTCGCATCCCCTCGCGTTCAGGCCGATGTCGGCGTGTTATGGTAGACTGCTGAGGATCTAAAGAGAAGATTGCggggtttttttctcttcttctcgTTGCGCGCAGTGATGGAAGAACTTACCGCGTTTGTCTCCAAATCGTTTGATCAGAAAGTCAAGGAAAAGAAGGAGGCGATCACGTACCGGGAGGTGCTGGAGACCGGCTCGGCGAGGAACAGGGAGAGCCTGTCGGCGGAACCGGCGCGCGAGGAGCTGAACGGCGTCGCGCGGAGCGGCGCGCGCTCGTCGCCGGCCGGAGAGGCGGACATGCTCGCGTCCGAGAGGAGCAGGGACTCCGTCAGCCCCAAACTTACAGACGGTAACGCGGATATGAAAGAACGCAAAGAGGATTGTAAGCCGCTGGAGGATGAGACACAGACTAAAATCAAGCAGAGAAGGAGTCGGACTAACTTTACCCTTGAGCAGCTGAATGAGCTGGAGAGACTGTTCGATGAAACGCACTACCCGGACGCCTTTATGAGAGAGGAGCTGAGCCAGAGACTCGGGCTGTCGGAGGCCAGGGTTCAGGTTTGGTTTCAGAACCGACGGGCCAAGTGCAGAAAGCAGGAGAACCAGTTACATAAAGGAGTCCTCATCGGAGCGGCGAGCCAGTTCGAAGCGTGTCGCGTCGCCCCGTACGTCAACGTGGGAGCCCTGCGCATGCCCTTCCAGCAGGATAGTCATTGCAACGTGCCGCCCTTCTCCTTTCAGGTGCAGGCGCAGCTGCAGCTGGACAGCGCCGTGGCCCACGCGCACCATCACCTGCACTCGCACCTGGCGGCGCACGCGCCCTACATGATGTTTCCCGCCCCGCCGTTCGGGTTGCCCCTGGCGACGCTCGCGGCGGAGTCCGCCTCGGCAGCTTCGGTGgtggcggcggcggcggcggcgaaAACCACCAACAAGAACTCGAGCATCGCGGACCTGAGACTCAAGGCGAAAAAGCACGCGGCGGCGCTGGGGCTGTGACGTCACCggcccaaacaaacaaacaaacacgttATTTATGTTTTCCCGTGAAGGACACGCGCGCGAGAGAAAGGATAGGCTATTTATGAGAACACAAACTGTGAAGCGGACGAACTTTACGCGGACTTTTACGCGGACGGAGGGACGGCTGAATGAACTGCGAGGACGTGGAAGAGTTGAACTTTTAGTGAACTTTCTTCCGCGGGAGACGAATATAATGATGCGAAGCAGCTGGGACGATTGTTCGGCCGTTTGTGTGACAACGCGAACATTTCTGCTTCGATACGTTATTAgtgattaatgaaaataaagaggCTGGCCtcgttttatttgaaacaaagtTTCTCTGTGgatatttgtgaaatattacagaaatcaCTTTTGTTgccaaaacatgaaaacatgcgTTTCTGTCCTCGCGGATAAAACACGATTTGAGTTTATGCTCTTTCGGTTGTGGAGCAAAATAAATGAGCATTAAACGAAAAGAGGATCGTTCCTTTGCCTGTTAATGAGTGTATTGTGAGTATAATCCGATATCAGGTGATTGTTCAGTGGATGCCCAGTTCACATCAACACACATCAGGCTTTTATTCTCGGTGTAAAAATCAAATTCAGGCAGGCTATACACGAACACTGATATGGTACGGGCACGTGTAAAATACCTATGTTAATAAcgacgaacaaaaaaaaaaaaatattttggttgtttttatgcTTCATCAAGGCATTGTGGGAGCACTCTTTGCTATTTCTTTTCGTTCTTGTTCCTTCATCTCTTGTACAACCATGTGAAACTAAATGTaatgttcatgttttataaGGGTTATAAAAGGACATCGACTGCGGGCactcatttttttatgatatctATGATTTTATCATGACTGTGAAACGTGAGCTCACCTCAACACCGTGTTTTcgattcataaaataaatgtaaaagaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09331 SHOX; short stature homeobox protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153959 lncRNA downstream 277146 7042394 ~ 7098067 (-) False G104252
TU153961 lncRNA downstream 289681 7042394 ~ 7085532 (-) True G104252
TU154033 lncRNA downstream 336021 7037726 ~ 7039192 (-) True G104314
TU154011 lncRNA downstream 338383 6806292 ~ 7036830 (-) True G104294
TU154424 lncRNA upstream 107998 7490106 ~ 7490776 (-) True G104570
TU154431 lncRNA upstream 114878 7496986 ~ 7497259 (-) True G104572
TU154447 lncRNA upstream 128026 7510134 ~ 7513305 (-) True G104585
TU154452 lncRNA upstream 141718 7523826 ~ 7524108 (-) True G104589
TU154458 lncRNA upstream 163848 7545956 ~ 7547059 (-) True G104595
XM_043258642.1 mRNA downstream 141854 7160336 ~ 7233359 (-) False dock10
XM_043258641.1 mRNA downstream 141855 7160336 ~ 7233358 (-) True dock10
XM_043258648.1 mRNA downstream 141858 7160336 ~ 7233355 (-) False dock10
XM_043258645.1 mRNA downstream 157768 7160336 ~ 7217445 (-) False dock10
XM_043258646.1 mRNA downstream 157768 7160336 ~ 7217445 (-) False dock10
XM_043259445.1 mRNA upstream 153487 7535595 ~ 7538399 (-) True srprb
XM_043259766.1 mRNA upstream 192457 7574565 ~ 7575452 (-) True dnajc30b
XM_043258478.1 mRNA upstream 224782 7606890 ~ 7615046 (-) True otol1b
XM_043259806.1 mRNA upstream 246569 7628677 ~ 7637765 (-) True nmd3
XM_043259805.1 mRNA upstream 246569 7628677 ~ 7637758 (-) False nmd3
TU154060 other downstream 255927 7114426 ~ 7119286 (-) False mmp28
TU153584 other downstream 1228696 6146173 ~ 6146517 (-) True G104011
TU153427 other downstream 1625874 5744532 ~ 5749339 (-) False pgm2l1
TU153319 other downstream 1936266 5438048 ~ 5438947 (-) True G103825
TU152826 other downstream 3558471 3816062 ~ 3816742 (-) True G103449
TU154467 other upstream 187738 7569846 ~ 7572090 (-) True G104603
TU154509 other upstream 257536 7639644 ~ 7640339 (-) False G104628
TU154511 other upstream 257536 7639644 ~ 7640339 (-) False G104628
TU154597 other upstream 575728 7957836 ~ 7958231 (-) True G104695
XR_006252682.1 other upstream 662714 8044822 ~ 8050710 (-) False nipsnap2

Expression Profile