RNA id: TU153427


Basic Information

Item Value
RNA id TU153427
length 510
RNA type TUCP
GC content 0.52
exon number 3
gene id pgm2l1
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 5737456 ~ 5749751 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCTGTGACCTATTTGAATGGTGACGTCACGCCGTTAATCTTTAATTTCCGAGCACGCCGTGCGTTAAAACATTTGGTCGCGCCGGTTGGGAGCAGCTGGATTAGAAGTTCCTGTCTAAACTCACCCATCTGGCTCTCCGGCTAAAATGGGGTCTAATGGAGACCTCAACGCAAACTCACAATGTCTCAGCAGCACTGGGGACCTGGCCCTGGACAAAGCAGTCAATCAATGGATGGCCTGGGATAAGAATCCTAAGACATGGAAGCAGATAGAGTCTCTGGTGCGAGAGGGCCGTGTGGTGGAGCTGAGAAGGAGGTTGTGCACCAGGATGACGTTTGGAACTGCTGGATTGAGAGCGGAGATGGGGGCGGGGTTTGCTTGCATCAATGACCTAACTGTCATCCAGTCTACTCAGGGGATGTACAAGTACTTAGCCAAATATGTCCCTGACCTTAAAACAAGAGGGCTCGTGGTCGGTTTTGACACTCGTGCCCATACAAGTAGTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153423 lncRNA downstream 96956 5639655 ~ 5647576 (-) True G103889
TU153421 lncRNA downstream 97515 5639380 ~ 5647017 (-) True G103888
XR_006252596.1 lncRNA downstream 179135 5564740 ~ 5565397 (-) True LOC122358345
TU153310 lncRNA downstream 553483 5190822 ~ 5191049 (-) True G103816
TU153307 lncRNA downstream 565043 5179282 ~ 5179489 (-) True G103813
TU153429 lncRNA upstream 1633 5750972 ~ 5778005 (-) True G103895
XR_006252601.1 lncRNA upstream 10164 5759503 ~ 5759953 (-) True LOC122358398
TU153442 lncRNA upstream 45464 5794803 ~ 5795998 (-) False LOC122359408
TU153455 lncRNA upstream 73179 5822518 ~ 5823055 (-) True G103915
XR_006252634.1 lncRNA upstream 197714 5947053 ~ 5948262 (-) True LOC122358585
XM_043259731.1 mRNA downstream 77056 5666407 ~ 5667476 (-) True LOC122359435
XM_043259690.1 mRNA downstream 83696 5659919 ~ 5660836 (-) True LOC122359398
XM_043259689.1 mRNA downstream 88789 5654826 ~ 5655743 (-) True LOC122359397
XM_043258383.1 mRNA downstream 168107 5575353 ~ 5576425 (-) True LOC122358541
XM_043259664.1 mRNA downstream 380579 5361716 ~ 5363953 (-) True LOC122359379
XM_043259699.1 mRNA upstream 8824 5758163 ~ 5764356 (-) True LOC122359407
XM_043259844.1 mRNA upstream 23270 5772609 ~ 5774713 (-) True LOC122359514
XM_043259700.1 mRNA upstream 45464 5794803 ~ 5801081 (-) True LOC122359408
XM_043259922.1 mRNA upstream 64039 5813378 ~ 5819067 (-) True rnf168
XM_043258189.1 mRNA upstream 70318 5819657 ~ 5838844 (-) True ano7
TU153319 other downstream 305585 5438048 ~ 5438947 (-) True G103825
TU152826 other downstream 1927790 3816062 ~ 3816742 (-) True G103449
TU152820 other downstream 1970718 3753341 ~ 3773814 (-) True LOC122359312
TU152818 other downstream 1974269 3753341 ~ 3770263 (-) False LOC122359312
TU152821 other downstream 1989365 3753341 ~ 3755167 (-) False LOC122359312
TU153584 other upstream 396834 6146173 ~ 6146517 (-) True G104011
TU154060 other upstream 1365087 7114426 ~ 7119286 (-) False mmp28
TU154467 other upstream 1820507 7569846 ~ 7572090 (-) True G104603
TU154509 other upstream 1890305 7639644 ~ 7640339 (-) False G104628
TU154511 other upstream 1890305 7639644 ~ 7640339 (-) False G104628

Expression Profile