RNA id: TU153442


Basic Information

Item Value
RNA id TU153442
length 521
lncRNA type sense_over
GC content 0.53
exon number 3
gene id LOC122359408
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 5794803 ~ 5801081 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGTTGTTTCCAGGTTTTGCGCAAGCTGGGCTACACGTGTTTGGCAGTTCTGGCAGCCGGCTTGTGTTTCGTGGTGAGCGGGACGGGGCTGGCCCTGGGGCCCCTCTGTTTGCACAACAGCACTGAGGGCCCCAAGTGGGGACGGCCATTGAAACAAGTCAGAACTGGTGAGCAGCTTTACCTGTATGCTCCGGAGCGGTGGTCGTCTGCCTGCGTGGAGCCTCGAGGGGTTGTGGTCTGGAACGTGACTCTTTTCTCCGTCCTCATGGCAGCGAGCGGCCTTCAGCTCATTTTCTGCGCTCTTCACCTCCTCGCCGCCGTATTGGAGTTCATGTGCGGACCCGGCTTTGGCAAGAATAAGGTTGTTCCTGCTTGAAATTACTAGAGGTTGTAATGTCTTCATCTCCATGTGAGaatgaaaagacatttttgggGTTAAACAGTCAGCTACGactgcttaattttattttttttaatgaagagggagacagagagaaatagaAAGGGAAGTGGAAGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153429 lncRNA downstream 16798 5750972 ~ 5778005 (-) True G103895
XR_006252601.1 lncRNA downstream 34850 5759503 ~ 5759953 (-) True LOC122358398
TU153423 lncRNA downstream 147227 5639655 ~ 5647576 (-) True G103889
TU153421 lncRNA downstream 147786 5639380 ~ 5647017 (-) True G103888
XR_006252596.1 lncRNA downstream 229406 5564740 ~ 5565397 (-) True LOC122358345
TU153455 lncRNA upstream 26520 5822518 ~ 5823055 (-) True G103915
XR_006252634.1 lncRNA upstream 151055 5947053 ~ 5948262 (-) True LOC122358585
TU153580 lncRNA upstream 323867 6119865 ~ 6120140 (-) True G104007
TU153582 lncRNA upstream 325616 6121614 ~ 6121921 (-) True G104009
TU153583 lncRNA upstream 373470 6169468 ~ 6173454 (-) True G104010
XM_043259844.1 mRNA downstream 20090 5772609 ~ 5774713 (-) True LOC122359514
XM_043259699.1 mRNA downstream 30447 5758163 ~ 5764356 (-) True LOC122359407
XM_043259789.1 mRNA downstream 45052 5737456 ~ 5749751 (-) True pgm2l1
XM_043259731.1 mRNA downstream 127327 5666407 ~ 5667476 (-) True LOC122359435
XM_043259690.1 mRNA downstream 133967 5659919 ~ 5660836 (-) True LOC122359398
XM_043259922.1 mRNA upstream 17380 5813378 ~ 5819067 (-) True rnf168
XM_043258189.1 mRNA upstream 23659 5819657 ~ 5838844 (-) True ano7
XM_043258775.1 mRNA upstream 46814 5842812 ~ 5887514 (-) False ece2b
XM_043258778.1 mRNA upstream 46814 5842812 ~ 5883995 (-) True ece2b
XM_043258776.1 mRNA upstream 46814 5842812 ~ 5877790 (-) False ece2b
TU153427 other downstream 45464 5744532 ~ 5749339 (-) False pgm2l1
TU153319 other downstream 355856 5438048 ~ 5438947 (-) True G103825
TU152826 other downstream 1978061 3816062 ~ 3816742 (-) True G103449
TU152820 other downstream 2020989 3753341 ~ 3773814 (-) True LOC122359312
TU153584 other upstream 350175 6146173 ~ 6146517 (-) True G104011
TU154060 other upstream 1318428 7114426 ~ 7119286 (-) False mmp28
TU154467 other upstream 1773848 7569846 ~ 7572090 (-) True G104603
TU154509 other upstream 1843646 7639644 ~ 7640339 (-) False G104628
TU154511 other upstream 1843646 7639644 ~ 7640339 (-) False G104628

Expression Profile