RNA id: XM_043259699.1


Basic Information

Item Value
RNA id XM_043259699.1
length 2456
RNA type mRNA
GC content 0.40
exon number 15
gene id LOC122359407
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 5758163 ~ 5764356 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTTTCAAATGTTAAACTGTTCTTCAGACAACGCAAGCAAAAAGTTAGGAgacatcagttttttttcttttcattacatATTGCCGTTCGAGgAAAACAATGCATAGTCAGGAGGAAGAAAGctTATCTTCAGAGTCACAGACTCATGGAGCATTCCACGGTCATTTCACTGAGTCTGTTCAGCCTTTGATTGAGTTGATCGACTCTCTGAGGTTGATCGGCATTGATAAGGATATAGATCTGCCATCCATTGCAGTGGTGGGAGATCAGAGTTCTGGAAAGAGCTCGGTTTTGGAGGCACTCTCTGGGGTGGCTCTACCTCGAGGAAGTGgtATTGTCACACGCTGTGCTCTTGAGCTGAAATTGCGGAATCTCAAGAAAGGAAAATGGTCAGGGACCATTTCTTACAATGATCACAAAGAGAGCTTTCATGACCCACTTATGGTGGATAACTTTGTTAGAAAAGCTCAAAATGAGCTCGCTGGAAATACAGTTGGAATAAGTGATGAACATATTTCTTTGGAAATTTCCTCTCCTGACGTTTGTGACCTCACTCTGATCGATCTACCTGGCATAACCCGTGTACCCGTGCAAGATCAACCTGAGGATATTGGAGATCAGGTGAaaaaattaatactaaaatatatttccaaaagTGAAACCATCATTTTAGTTGTTGTGCCTTGCAATGTTGACATAACAACGACGGAAGCGCTTAGAATGGCGCAACATGTGGACCCAGGACACAGAACTCTCGCAATTCTCACAAAACCAGATCTCATCGACAGAGGGGCGGAGATGGATGTTTTGAAAATTGTCCAGGGCAAAGTCATTCCTCTCAGCAAGGGCTACATTATCGTGCGATGTCGAGGTCAGAGTGACATCAATGACAAAATCCCTCTGGATAAAGCCATAAACATGGAATTTAAATTCTTTAGAAAACACAAATACTTCAGCTATCTACTGAATGATAATAAAGCATCTATTCAGTGCCTGTCAAGGAAATTAACCAAAGAACTGGTTGACCACATCAAGATATCATTACCACACGTAGCTGAGCAGATTAACAGTCAGACAGTTAATGTGAGAGAAGAACTTAAAAAGTACGATCAGGGTCCACCTCTGCAGGAAGAAGAAATGGGACCTTTTCTCAGTAAGATAATATTAGAGTTCAGCGATCAAATCGATGAACTGAGCAGAACAGGACATTCATCAAAAggcaaaaacatttatgcacTTCTACGTCCTGTCTTCAAGAAATGGGACAACCACCTGAGTGACACTAAAGATTCCTTTGAGACAAAAGTGCAGGAAATGATAGACAAGTACAACGAGAACCATCGTGGCAGAGAATTGCTAACGTTCACTGAGTACACTGAATTTGAAAACGTCATCCAAAACCATGTAGCAGCTCTTCAAGAGCCAGCTATGGAAACACTGAAAGATGTGCGAGGTAAAGTTACTCCAACACTGAAACACAATGTTTCTAAAAAGATTGATGAgattcaaacaaaacaagaggCCAAAGTGGAGAAAAGAATCAAGGAGTTTATTGAAATGGAGCATCTGATTTTCACCCAGGACACAgtgttgcaaaaaaaacttgatgaaTCAGACATCCATCAGATGACTGGTCTGGAACATCATGAAAAACTCTGTGGAGATGACACGGTTTTAAATTCCAAAGGCTGTGCAGAGTTGGATTCGAGAAATCTAGTACCAGAAAAACTGGTTCTTTATTATGATATTGTCTATCAACGCCTAACAGACTACGTGCCGATGCTGGTAATCCTCCTCATGCTGAGGAATGCAGCTAAGACGCTGCGACATGGCATGCTGGAAATGAGGAAAGTGGCGGATGTGGTCGATCTGCTAAAAGAAGACTTGGACCAAGGGCGCAGGAGAAATGAGCTAAAGCAGCGTCTGGAAAGCCTCTTACAAGCTCAAGAACTAATAAACAACAGACAATGAAACATCTTCATAAACATAGAGGCTGCAGAAATTGGCCACTGGATATACGACAAATGAGTTTTAAATTCTAATGATCAAATCATGATAGCAAAGCATAACAAGTGCTTTATTTCGAATCACCAGTTGCTGAATGGGAATGTCAGCTCAATTTattacatgtacacacacacacacacacacacacaataagtcctttacacaatctgacatggCTGCATTTAAAGTTGAACCGGAAACTAAGTGCTGgtcgtccggtcagaggagaaggtttttattttctccattcTTTCATGGAGTATCGCTTCCTTGCTGCTGAGGACATTTAATTTCGATTAGCGATTATCATCGAATTGATTACAAACACTGtctctaataaaacaaaaattaagtgtttaatcttgtcattatacattactatcactctgttCTCGTATTTGAtatttgacacaatctgtatcgttaaaagcgttatataaataagtgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153423 lncRNA downstream 110587 5639655 ~ 5647576 (-) True G103889
TU153421 lncRNA downstream 111146 5639380 ~ 5647017 (-) True G103888
XR_006252596.1 lncRNA downstream 192766 5564740 ~ 5565397 (-) True LOC122358345
TU153310 lncRNA downstream 567114 5190822 ~ 5191049 (-) True G103816
TU153307 lncRNA downstream 578674 5179282 ~ 5179489 (-) True G103813
TU153442 lncRNA upstream 30447 5794803 ~ 5795998 (-) False LOC122359408
TU153455 lncRNA upstream 58162 5822518 ~ 5823055 (-) True G103915
XR_006252634.1 lncRNA upstream 182697 5947053 ~ 5948262 (-) True LOC122358585
TU153580 lncRNA upstream 355509 6119865 ~ 6120140 (-) True G104007
TU153582 lncRNA upstream 357258 6121614 ~ 6121921 (-) True G104009
XM_043259789.1 mRNA downstream 8412 5737456 ~ 5749751 (-) True pgm2l1
XM_043259731.1 mRNA downstream 90687 5666407 ~ 5667476 (-) True LOC122359435
XM_043259690.1 mRNA downstream 97327 5659919 ~ 5660836 (-) True LOC122359398
XM_043259689.1 mRNA downstream 102420 5654826 ~ 5655743 (-) True LOC122359397
XM_043258383.1 mRNA downstream 181738 5575353 ~ 5576425 (-) True LOC122358541
XM_043259844.1 mRNA upstream 8253 5772609 ~ 5774713 (-) True LOC122359514
XM_043259700.1 mRNA upstream 30447 5794803 ~ 5801081 (-) True LOC122359408
XM_043259922.1 mRNA upstream 49022 5813378 ~ 5819067 (-) True rnf168
XM_043258189.1 mRNA upstream 55301 5819657 ~ 5838844 (-) True ano7
XM_043258775.1 mRNA upstream 78456 5842812 ~ 5887514 (-) False ece2b
TU153427 other downstream 8824 5744532 ~ 5749339 (-) False pgm2l1
TU153319 other downstream 319216 5438048 ~ 5438947 (-) True G103825
TU152826 other downstream 1941421 3816062 ~ 3816742 (-) True G103449
TU152820 other downstream 1984349 3753341 ~ 3773814 (-) True LOC122359312
TU152818 other downstream 1987900 3753341 ~ 3770263 (-) False LOC122359312
TU153584 other upstream 381817 6146173 ~ 6146517 (-) True G104011
TU154060 other upstream 1350070 7114426 ~ 7119286 (-) False mmp28
TU154467 other upstream 1805490 7569846 ~ 7572090 (-) True G104603
TU154509 other upstream 1875288 7639644 ~ 7640339 (-) False G104628
TU154511 other upstream 1875288 7639644 ~ 7640339 (-) False G104628

Expression Profile