RNA id: TU153580


Basic Information

Item Value
RNA id TU153580
length 276
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G104007
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 6119865 ~ 6120140 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACCAGTGAGGAGGGCCTGCTTTAGGTGCTGTTGATAAGGGCTTGCTGCATCATCATTTATTGGTATTCCACTATTAGCTTGGAACACGGTTTCCATTCTTGATCTGTATTCAGATACATCTTCACCTTCTTTCTGTCTACACTGTGCTATTTTTGCATAGTCTGGCCTAGTAGCCAAACTAGTGGTGATTCTCAGGCATACTGCATCAAATGCAttagttaaaacatttgaattggGTGCTAATGTTTCACCTTCAGCATTCTGTCCAGTATAG

Function

GO:

id name namespace
GO:0008301 DNA binding, bending molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252634.1 lncRNA downstream 171603 5947053 ~ 5948262 (-) True LOC122358585
TU153455 lncRNA downstream 296810 5822518 ~ 5823055 (-) True G103915
TU153442 lncRNA downstream 323867 5794803 ~ 5795998 (-) False LOC122359408
TU153429 lncRNA downstream 341860 5750972 ~ 5778005 (-) True G103895
XR_006252601.1 lncRNA downstream 359912 5759503 ~ 5759953 (-) True LOC122358398
TU153582 lncRNA upstream 1474 6121614 ~ 6121921 (-) True G104009
TU153583 lncRNA upstream 49328 6169468 ~ 6173454 (-) True G104010
TU153591 lncRNA upstream 55459 6175599 ~ 6177242 (-) True G104015
TU153596 lncRNA upstream 59284 6179424 ~ 6180800 (-) True G104019
TU153908 lncRNA upstream 247662 6367802 ~ 6429761 (-) True G104225
XM_043258473.1 mRNA downstream 122935 5986535 ~ 5996930 (-) False eif4h
XM_043258472.1 mRNA downstream 122935 5986535 ~ 5996930 (-) False eif4h
XM_043258471.1 mRNA downstream 122935 5986535 ~ 5996930 (-) True eif4h
XM_043258466.1 mRNA downstream 135609 5966954 ~ 5984256 (-) False rffl
XM_043258465.1 mRNA downstream 135610 5966954 ~ 5984255 (-) True rffl
XM_043258297.1 mRNA upstream 42614 6162754 ~ 6164699 (-) False lipt2
XM_043258295.1 mRNA upstream 42614 6162754 ~ 6164692 (-) False lipt2
XM_043258296.1 mRNA upstream 42614 6162754 ~ 6164661 (-) True lipt2
XM_043259705.1 mRNA upstream 122781 6242921 ~ 6255555 (-) True LOC122359410
XM_043259200.1 mRNA upstream 229346 6349486 ~ 6394220 (-) False zmp:0000001236
TU153427 other downstream 370526 5744532 ~ 5749339 (-) False pgm2l1
TU153319 other downstream 680918 5438048 ~ 5438947 (-) True G103825
TU152826 other downstream 2303123 3816062 ~ 3816742 (-) True G103449
TU152820 other downstream 2346051 3753341 ~ 3773814 (-) True LOC122359312
TU153584 other upstream 26033 6146173 ~ 6146517 (-) True G104011
TU154060 other upstream 994286 7114426 ~ 7119286 (-) False mmp28
TU154467 other upstream 1449706 7569846 ~ 7572090 (-) True G104603
TU154509 other upstream 1519504 7639644 ~ 7640339 (-) False G104628
TU154511 other upstream 1519504 7639644 ~ 7640339 (-) False G104628

Expression Profile