RNA id: XM_043258465.1


Basic Information

Item Value
RNA id XM_043258465.1
length 4001
RNA type mRNA
GC content 0.45
exon number 8
gene id rffl
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 5966954 ~ 5984256 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCGCGCTCGCGCTCCAGTTAACGACTTTAGTACTTCGCAAACGAAACATCAGAAGCGTGTGAGCTCGACCAGGTTcaagaataaaatgaaacgCGGACGGTTCGTTGAATGTCGCTCGTTTGTTCGGTGAGGATCGTCGACCAGTTGACAGTTTGGGGACACATGCGGCTGCGGTTTGCGAGCGCTTCTCTTCGTCTCGTTCGAGATAACCATGGCTTGAGTTTCATATCCCAGACTGTCTGCATCTGAACCTCACCCTTTAAAAGTCACTGACTCATTCTCAAGTAGGTGAGGAGCATGTGGGCCAGCTGCTGTGGCTGGCTTTGCCTGGATGATTCCACCGTGGAGGACACCAGAAGCAGCACACGTCATCAGGCCTTCACCAACTCGGGCTTCAGCAGTTACCCATCTCCCCCCGCTCCAGAACAGACATGCAAGGCCTGTGGAGGTCGCTCCGACAGCCTAGCCAGAAAGCATTTGTGCATggactgcaagaaaagcttctGTAGCCGCTGCTGCACTCAGCAGGACCTCCAGCCATGGCTGTGCCACACCTGCCAGCGTTTCCGAGGCATCCTGTTCGAGCGGGCCGAGCTGATGAAGCTCAAGGTAAAGGATCTGAGAGACTACCTCCACCTGCACGAGATCCCCACACAGATGTGCAGAGAGAAGGAGGAGCTGGTCGAGCTGGTTCTCGGCCAGCAGACGCCTACGTCCGACACGCACATTCCTCCACCCCCAGTGACCACACAGGAACCTAACACTCCTATCATAACCGTGAGCCCGTCGACCAACAATGGCACAACGGAACTGGGGCCTCAGACTCAAGCAACAGAAGATGGGCAGAGCTTGGCTGAGGCAACAGCTGAAAGCGAGATGGACGCTGAGCTGCAGGTGGAGCAGGAGTTGCAGTCTTCAGACTCCGAGGAAGTGCTGGCTCCGGGGCGACGGGCGTCTCTCTCCGACCTGCGATCGGTGGAAGACATCGAGGCTCTGAGCGTCCGGCAGCTGAAGGAGATCCTGGCCAGGAACTTCGTCGACTATAAGGGATGCTGTGAGAAATGGGAGCTGATGGAGAGAGTCACACGTTTGTACCACGACCAGAAGGACCTGCAGAACATGGTGTCTAACGCCACAGAAGGCACAGACAGCGGACCTGGGACGGCCGTGGAGGAGAACCTGTGTAAGATCTGTATGGACTCACCCATTGACTGCGTTCTTTTGGAGTGCGGACACATGGTCACGTGCACGAAGTGCGGCAAGCGCATGAGCGAATGTCCGATCTGCCGGCAGTACGTGGTGAGGGCGGTGCACGTGTTCAGATCCTGAACAACAGGATCCATTTTCCATTCACAGCTCACCGCGATCTCCCAGTCCTTCCCTCCAGCGACGGATACTGTAGAAAACTGTCAGGTGGCCTTTAATTCTCGCACAGCTATCTTGCGGCACTTCTGATTCTGCAGATCTCTGAGCAATAACTACTGGATTGAGTCTCATTTTCTTCATGTTCAAAGTGTGCCTTCTagaagctttatttttgatcatgGGATTATGTCACATGTTTCTTGACACTTCCCACCTCAGTAAACAAAAGCGTCTTCTGTGCTGCCCTGCTGCTTCTCACACACCTGTATAATTTCTACTATTTCGATTTTTCAACGATCCTTTCTTTTTAAACCATAAATAGTGTAGCTGGGGTTCAACGTACCACCGCCATCCAGTAAACCGGAACGAGACTCGCCACACAAGTCTCGTCGGATCTAGGTTTGTTGATTCGTGTGAGCGAATGCAAATAGTCTAAATTGCTGACAGTTACGTGCGAGACGGGCAAAGGTGCGGATCTGATCGAACCGATTCTAAACAAAACTGAGGAGAACGACTGTCAAGCGAATATACGACGTGTTTTGTATTATCCAACATGTCTCTCTTCTTTGTGATGCTTTGGTGTGAAAAATACGTAGCCCCACACATGATATGCAaggaaaaaatactgtatttaccTCGTACTAAATACGGCTACATACCAATCCATAAGTTCTGGCCCTGTTGTACTAAATCTTTCCCTTTTTTActcaataattgttttatttcctcAATTTTAGAACAAAATTTTATCAGCAGTTCATTCCATCTTTGTATAGAATTGTGGGCACATCATACCAACTCTCAGTTTCTTGTCAAATTTTAGCGCCGTTTGTTCCTTTCAGTGAATTATAGCAATATCGTAccactttttaataaattgtgatcATTTGTTCTCTCTTTTTAGCATTTCACCATGTCGTACTGAATCCTTCCCTCTCGTACAAATCAGTTTTTAGTTAATTGTAGCAACGTTAAACCTCTTTTTACTAAATTGCTTACTGAACTTTTACTAATATGTGGACATCAGTCCTCGTTTTTGAGGATTGTTTTAAAtcacttatgttttttttttttttttttttattcgtgtGCCAAGATGGATACGATTTTGTCCACATATCATGTGCGGGGCTCCACAGGAAAGATCTGATCTGATGATCTGACTGGTTTTATGGGAATTTCGTACACGGCAGCCTTTGGCGGAGGCTTCAGTCTCTTCTGATTACGAATGGACGTCCCATCCGAGCCTTGGTGTGCGTCCTCTGCAGTGCTCTTGGCTCGTCTCACGCCCCAGAGGAATCTCTATGGCATGACAGTCGTTCAGCCGGATAGGCCTCGAGCCGCACCAAGCGTCGCGATACGCCTCCAGCGATCAGTACTGCGTTTCTTGCAGGAATTCGATTAGCAGCACTTTAGACTCATCGGTGGAGGAGATATCAGGTGAACGTGCCTCAACACTCTTCTTGACTTCACCGGTGCCTCACAGGACAAGTAAAGGCCTGCCGATAAACACCAGCACCTCCTTTCCCTCGAGCTTTTCAGATGCATTTAGCATCGACTAGCGCTATCCTTAGCCGGCGTGGATGAACAGGAATGTCCGTGTTTTAAAACCAGTACCTGACAGGAATAACTCACTCGTAGCGACATCGCTCACCCTGTCATTCCAGTCACATATTTTCTCTGTTATAGACCGTGAGTCAACACATTTAGTTCATgcttatattaaattataaaatgggtGCCATTTAGATGCCTGGCACCAGGATTGACGTCTTTGAcattgaatgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgtgagcaTCAACATACGggacatttcaaaatatgtgaCTGCTAATGGATTTTTAAAGCTGAGGCTGAAGGGCTAAAAATCAAGTTATGGTTTCGTAAGACTTCGAATATAGCACATCGTCTATCATAATACATTTaggatgcatttttttgttcttttgtagagcttagtatttaaaaaaaccccatccatgTTAACTGGATGGAAGCTCAAGGCTTTAAGATTCTTCCTAACATCTCCTTTcggttttaaaataaaggaaataatagAGGTTTGGAACATTAGGGtgaatacataataataatcattattattattattactgtatttttttttttcctcttgtcagTCTTTAATTTTCTGAATCTGAAACTTGCCAACTAATGTTTTTCCAGGTTTGCCTTAAGAGCTGTTCTTTAACCGGAATTTCCTTCCCAAAGAGAAAATCGAGAAGCAAAAGCTATATAggttaataatgattaaaaaaaaaaagcggggCCTTGAAAAGCTTCTTTGTTCAAATCTCAAAGACTTGATTTTGTATCACTGTGAAATAGGAGCTTTCCTTTGCTAGTCGTGCAAGGGACGATCAATGTTGTCATGTCCTGTTCAGGTTTGATATGTAAATATGAAGAGGgaacactttcatttttaatacagaTGTTGTTTGTATGAGATGGTGTGAACCAGCCTTAATTTCGTAATAAGAACCGatcagatatattttaaaaaccgtACTAAGCCACCAAAGTAGAGTTTTGTGTGCGTTGttgttaaagatttttttgtattaaaatatatttgcagcA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20804 RNF34; E3 ubiquitin-protein ligase RNF34

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252634.1 lncRNA downstream 18692 5947053 ~ 5948262 (-) True LOC122358585
TU153455 lncRNA downstream 143899 5822518 ~ 5823055 (-) True G103915
TU153442 lncRNA downstream 170956 5794803 ~ 5795998 (-) False LOC122359408
TU153429 lncRNA downstream 188949 5750972 ~ 5778005 (-) True G103895
TU153580 lncRNA upstream 135610 6119865 ~ 6120140 (-) True G104007
TU153582 lncRNA upstream 137359 6121614 ~ 6121921 (-) True G104009
TU153583 lncRNA upstream 185213 6169468 ~ 6173454 (-) True G104010
TU153591 lncRNA upstream 191344 6175599 ~ 6177242 (-) True G104015
TU153596 lncRNA upstream 195169 6179424 ~ 6180800 (-) True G104019
XM_043258464.1 mRNA downstream 6066 5926061 ~ 5960888 (-) True tfdp2
XM_043258469.1 mRNA downstream 42500 5903705 ~ 5924454 (-) True atp1b3b
XM_043258778.1 mRNA downstream 82959 5842812 ~ 5883995 (-) True ece2b
XM_043258473.1 mRNA upstream 2280 5986535 ~ 5996930 (-) False eif4h
XM_043258472.1 mRNA upstream 2280 5986535 ~ 5996930 (-) False eif4h
XM_043258471.1 mRNA upstream 2280 5986535 ~ 5996930 (-) True eif4h
XM_043258297.1 mRNA upstream 178499 6162754 ~ 6164699 (-) False lipt2
XM_043258295.1 mRNA upstream 178499 6162754 ~ 6164692 (-) False lipt2
TU153427 other downstream 217615 5744532 ~ 5749339 (-) False pgm2l1
TU153319 other downstream 528007 5438048 ~ 5438947 (-) True G103825
TU152826 other downstream 2150212 3816062 ~ 3816742 (-) True G103449
TU152820 other downstream 2193140 3753341 ~ 3773814 (-) True LOC122359312
TU153584 other upstream 161918 6146173 ~ 6146517 (-) True G104011
TU154060 other upstream 1130171 7114426 ~ 7119286 (-) False mmp28
TU154467 other upstream 1585591 7569846 ~ 7572090 (-) True G104603
TU154509 other upstream 1655389 7639644 ~ 7640339 (-) False G104628
TU154511 other upstream 1655389 7639644 ~ 7640339 (-) False G104628

Expression Profile