RNA id: TU154498


Basic Information

Item Value
RNA id TU154498
length 1321
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G104626
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 7627413 ~ 7654183 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTcgttaattacattaaattgtcCCCTTTTTACGTTTCGttaacgaaacaaaacaaatacaaactaCTCGACCATTCTTCAACATAACTTTAATGAAAGGTTTTCTTCGGTCACGTACTAAAGAAGAGTAAAATACGTCATTTACATGTTCGCCTTgtgttaatatttcataaaaacattcatttagttACTCTATATGTAAAATGACAGATTGAATTTTGATGTGCAGATGACACCGTAAACACAGATTCTGGACGACAAAACACTTTTGGCAAATAAATTCATCATAAAAgcatgttaattaaaataagacgGCACACTTCCAATGATCATACTGAATTAAATCACATGTATACCTGAAATATAGAAAGGTGTTTTCTGCAGTGAGTGCTGACTTTTTTCATTATAACTGTCTTCATATCAACAGAGAAAACCTCAAACAAGAACTACAGCACAGACACACTTCTCTGCCTGTAAAATATGACTATTTCTTCAAATTCATTCACATTCAGAAATCAGTGCCTTGTGTGAAGTTTGACTGTAGAAATTGCATTGCATCAGCGTCTCCGCAATGgacgtgaatgggtgccgtcagaatgagaaaaagtcacaatgacccacagcgctccagtccatcagttatcatctggagaagacaaaagctcaaactaatccagcgttAAGACGTTTTTAACTCAAATGCAAGTCcgtaatccataataacgccGCCTCCAGCGAAAACGTGTTCTGAATCAGAGAAAACCGATAAAGACAAAACAGCTCTGAAGAAATATGTGGAGATGGACTTCTTTCTTAATGGAGGGTGCGTCATTATAATTCATAGAATTGTATTTTGAACTGATGAAGTTACAGCTTCCCAGCACGCTCCCATCACAGCAGAGGGGAAGATTTCTATCTATTAGTGTTTTATACAGAGCCCAGCACAGCATACACGTTTCTCCAGACCCATTACACACTCATCATTTCATAACTGATGTATTTGGACGTTTTTTTTACAGACCATACTGGATAGCTGGTTTACTTCTTAAGGCAACCTACTTTTATATTACAcatgataaaatattacagtgaaactagatttaaaaaaaagaaaagtaagcaataatgctaatgatttttgctGCATGATCTCTCTAGTcgttttgaatgatttttttatgaaagagCCGCGTAAAGATTCTTCAAAAGTTCTATTTTCTAACGAGGACGTAATTGCGTAGATTTGtaatattcaatttaaatacaaagagTCGCTTctccaaaaaatacatttttatctaatTTGAAACTTATGCATA

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0004614 phosphoglucomutase activity molecular_function
GO:0004359 glutaminase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154492 lncRNA downstream 9938 7617231 ~ 7617475 (-) True G104622
TU154474 lncRNA downstream 48058 7578418 ~ 7579355 (-) True G104607
TU154477 lncRNA downstream 49007 7577691 ~ 7578406 (-) False G104607
TU154460 lncRNA downstream 76528 7549934 ~ 7550885 (-) True G104597
TU154458 lncRNA downstream 80354 7545956 ~ 7547059 (-) True G104595
TU154554 lncRNA upstream 125633 7779816 ~ 7805389 (-) False G104663
TU154555 lncRNA upstream 127400 7781583 ~ 7783581 (-) True G104664
TU154556 lncRNA upstream 127400 7781583 ~ 7783065 (-) False G104664
TU154560 lncRNA upstream 138734 7792917 ~ 7793498 (-) True G104666
TU154553 lncRNA upstream 148228 7802411 ~ 7805389 (-) True G104663
XM_043258478.1 mRNA downstream 12367 7606890 ~ 7615046 (-) True otol1b
XM_043259766.1 mRNA downstream 51961 7574565 ~ 7575452 (-) True dnajc30b
XM_043259445.1 mRNA downstream 89014 7535595 ~ 7538399 (-) True srprb
XM_043258900.1 mRNA downstream 245305 7375213 ~ 7382108 (-) False shox2
XM_043258835.1 mRNA upstream 26530 7680713 ~ 7684393 (-) True nudt8
XM_043258836.1 mRNA upstream 26998 7681181 ~ 7684393 (-) False nudt8
XM_043258840.1 mRNA upstream 50078 7704261 ~ 7709530 (-) False tagln
XM_043258838.1 mRNA upstream 50078 7704261 ~ 7709524 (-) False tagln
XM_043258837.1 mRNA upstream 50078 7704261 ~ 7709524 (-) True tagln
TU154467 other downstream 55323 7569846 ~ 7572090 (-) True G104603
TU154060 other downstream 508127 7114426 ~ 7119286 (-) False mmp28
TU153584 other downstream 1480896 6146173 ~ 6146517 (-) True G104011
TU153427 other downstream 1878074 5744532 ~ 5749339 (-) False pgm2l1
TU153319 other downstream 2188466 5438048 ~ 5438947 (-) True G103825
TU154597 other upstream 303653 7957836 ~ 7958231 (-) True G104695
XR_006252682.1 other upstream 390639 8044822 ~ 8050710 (-) False nipsnap2
unassigned_transcript_1962 other upstream 1350236 9004419 ~ 9004492 (-) True trnat-agu_3
unassigned_transcript_1963 other upstream 1357084 9011267 ~ 9011340 (-) True trnat-ugu_1
unassigned_transcript_1964 other upstream 1357384 9011567 ~ 9011640 (-) True trnat-agu_4

Expression Profile