RNA id: XM_043258836.1


Basic Information

Item Value
RNA id XM_043258836.1
length 1011
RNA type mRNA
GC content 0.63
exon number 5
gene id nudt8
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 7680713 ~ 7684393 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTTTGAACAGTAGGCGGCGCCACGCGACAGCTGAAGATTCAAACACGCgccgaagaagaagaagccgCTTCTGTCACAACATCCGGTGAACACCATCGAGCTCGTCTAGTTCTTTTAAGGATGCTCAGGCCCCCACAGACGAAGGCTTGCTTGAATCGGCTCCGACCGGTGTTGACGGCCAGAGACGCTGGAGAACGGACGCTCTGCAGCCGCCCGCCCGAGCTCTTCTCCCCCGGCCCTGTTTCCCGAGCGTCCTCCTTGGCGCCGGACTCTTCCAGACGTGCGGGCCCCGGCGCTCGCTCCCTGTTGAGACGCCCCACGAACTCTCCGCACGCACCGGATCACGCCTCTCCCTCACGGAGCTCCACCAATCCAAGCAGATGGCAGAGCAGTTCAAACGGCTCGGGCGTCCTTTCGACAGCCGGGCTGCACAGGAGGGCCGCGGGGGACGAGTGCCTGTCCGCCGGGAACGAGGCCCGCTGCAGACGCTCTCTGCAGGCGAACGCCGCCCTGTACGCCGGGGAGAGGACGAGCTGGGCGGCGGTGCTGGTGTGTCTGTGCGCCGTGAGCGGGGACCCCGCGCTGCTCTTCACGCTCAGATCCGCCAAACTGAAGGGCCGGCACAAAGGAGATGTCAGTTTCGCGGGGGGGAAGAAGGACCCGTCTGACAGGACCGTCGTGGACACGGCTCTCAGGGAAGCGCGCGAGGAGCTGGGCGTCCTCATCGCTGAGGATCAAGTGTGGGGTGTGCTCAAACCGCTGCGGGACGTGTCTGGAATGATGATTGCACCGGTGATAGCCAATCTTGGACCTCTGGAGGCTCTCTCTTTTCGACCTAATCCAAGTGGAGGAGATTTTTACCCTGACGCTTGAGCATTTATGTCAACCCCAAAACCGAGGCTACACGCACTTCCGCACGGGAGATCGGTACGGATACACCCTCCCGGTGTTTCTCGGCCCCAAGCACCGCGTCTGGGGCCTCACGGCGGTGGCCCTGGATCACGCGCTC

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154498 lncRNA downstream 26998 7627413 ~ 7654183 (-) True G104626
TU154517 lncRNA downstream 31471 7645426 ~ 7649710 (-) True G104634
TU154504 lncRNA downstream 40842 7639644 ~ 7640339 (-) False G104628
TU154505 lncRNA downstream 40842 7639644 ~ 7640339 (-) True G104628
TU154510 lncRNA downstream 40842 7639644 ~ 7640339 (-) False G104628
TU154554 lncRNA upstream 95423 7779816 ~ 7805389 (-) False G104663
TU154555 lncRNA upstream 97190 7781583 ~ 7783581 (-) True G104664
TU154556 lncRNA upstream 97190 7781583 ~ 7783065 (-) False G104664
TU154560 lncRNA upstream 108524 7792917 ~ 7793498 (-) True G104666
TU154553 lncRNA upstream 118018 7802411 ~ 7805389 (-) True G104663
XM_043259806.1 mRNA downstream 43416 7628677 ~ 7637765 (-) True nmd3
XM_043259805.1 mRNA downstream 43423 7628677 ~ 7637758 (-) False nmd3
XM_043259807.1 mRNA downstream 43437 7628677 ~ 7637744 (-) False nmd3
XM_043258478.1 mRNA downstream 66135 7606890 ~ 7615046 (-) True otol1b
XM_043259766.1 mRNA downstream 105729 7574565 ~ 7575452 (-) True dnajc30b
XM_043258840.1 mRNA upstream 19868 7704261 ~ 7709530 (-) False tagln
XM_043258838.1 mRNA upstream 19868 7704261 ~ 7709524 (-) False tagln
XM_043258837.1 mRNA upstream 19868 7704261 ~ 7709524 (-) True tagln
XM_043259801.1 mRNA upstream 26484 7710877 ~ 7714385 (-) True cbln18
XM_043258479.1 mRNA upstream 34994 7719387 ~ 7720924 (-) True cbln20
TU154509 other downstream 40842 7639644 ~ 7640339 (-) False G104628
TU154511 other downstream 40842 7639644 ~ 7640339 (-) False G104628
TU154467 other downstream 109091 7569846 ~ 7572090 (-) True G104603
TU154060 other downstream 561895 7114426 ~ 7119286 (-) False mmp28
TU153584 other downstream 1534664 6146173 ~ 6146517 (-) True G104011
TU154597 other upstream 273443 7957836 ~ 7958231 (-) True G104695
XR_006252682.1 other upstream 360429 8044822 ~ 8050710 (-) False nipsnap2
unassigned_transcript_1962 other upstream 1320026 9004419 ~ 9004492 (-) True trnat-agu_3
unassigned_transcript_1963 other upstream 1326874 9011267 ~ 9011340 (-) True trnat-ugu_1
unassigned_transcript_1964 other upstream 1327174 9011567 ~ 9011640 (-) True trnat-agu_4

Expression Profile