RNA id: XM_043258479.1



Basic Information


Item Value
RNA id XM_043258479.1
length 768
RNA type mRNA
GC content 0.51
exon number 3
gene id cbln20
representative True

Chromosome Information


Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 7719387 ~ 7720924 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGAGGGGTGAGGCTATTAAATTAAGTTCAATTAAATCACTGTGTTCAACCTCTATATACAGAACTGTGTTGGATGTACGTAACTTTCTTTTACTGGTTTTAGCACTTGTGATCCTAAGCCTCTTGGGATGTGCACTTGGACAGGACAGGATATTTTCCTGGAGTGGAAACGACAGCCAAGTTGACGCCAGTGACAATGCATGTCTGACTGACACGGTGTCCTGCGGATGCTGCCTGATGCAGAAGCAGATGTGGAAGCTCGAGATGTTTTTCAACCTGACATTAAATGAACTACAGAGGAACCTGGAGACAGCTCATTCAGTGTTAAACAATATTCGTGCCAGCCGCAGCGCCTTCTCCGTGGCTCTCACTGACACGCGCCTCTGTGTCGGCCCAAATCGTGAAGACTCTGTGGTGAAGTACAGCAGCGTGTTTGTTAACTTGGGAGATGGCTACAGCATCGACACTGGTGCTTTTGTAGCTCCACGTTCTGGCGTCTATAGCCTGGCGCTAACCGTTTACAGCGATTCTGGCTCTCCTGGGGTGGCTTTGGCTGCTTGTGCTCGGCTCCGACTGAACGGGCGCACGATTGCATCGCCAAACGAGACCAACCTTCAAGACGAGGAGGACAGCGCTAGCGCACTTCTAGTAGTGCAGCTGCATGCAGGAGACCGGGTGGACGTCGCTCTCCCAGCCGGCTGCTTTCTGTGTGACAATGGCAACCACTACAACACTTTCACTGGGTTCCTGCTCTATGCAACCGATTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU154498 lncRNA downstream 65204 7627413 ~ 7654183 (-) True G104626
TU154517 lncRNA downstream 69677 7645426 ~ 7649710 (-) True G104634
TU154504 lncRNA downstream 79048 7639644 ~ 7640339 (-) False G104628
TU154505 lncRNA downstream 79048 7639644 ~ 7640339 (-) True G104628
TU154510 lncRNA downstream 79048 7639644 ~ 7640339 (-) False G104628
TU154554 lncRNA upstream 58892 7779816 ~ 7805389 (-) False G104663
TU154555 lncRNA upstream 60659 7781583 ~ 7783581 (-) True G104664
TU154556 lncRNA upstream 60659 7781583 ~ 7783065 (-) False G104664
TU154560 lncRNA upstream 71993 7792917 ~ 7793498 (-) True G104666
TU154553 lncRNA upstream 81487 7802411 ~ 7805389 (-) True G104663
XM_043259801.1 mRNA downstream 5002 7710877 ~ 7714385 (-) True cbln18
XM_043258840.1 mRNA downstream 9857 7704261 ~ 7709530 (-) False tagln
XM_043258838.1 mRNA downstream 9863 7704261 ~ 7709524 (-) False tagln
XM_043258837.1 mRNA downstream 9863 7704261 ~ 7709524 (-) True tagln
XM_043258835.1 mRNA downstream 34994 7680713 ~ 7684393 (-) True nudt8
XM_043258196.1 mRNA upstream 6878 7727802 ~ 7739864 (-) True aadac
XM_043259521.1 mRNA upstream 77238 7798162 ~ 7808797 (-) False lxn
XM_043259520.1 mRNA upstream 77238 7798162 ~ 7808522 (-) False lxn
XM_043259519.1 mRNA upstream 77238 7798162 ~ 7806556 (-) True lxn
XM_043258846.1 mRNA upstream 213331 7934255 ~ 7951212 (-) False si:dkeyp-97b10.3
TU154509 other downstream 79048 7639644 ~ 7640339 (-) False G104628
TU154511 other downstream 79048 7639644 ~ 7640339 (-) False G104628
TU154467 other downstream 147297 7569846 ~ 7572090 (-) True G104603
TU154060 other downstream 600101 7114426 ~ 7119286 (-) False mmp28
TU153584 other downstream 1572870 6146173 ~ 6146517 (-) True G104011
TU154597 other upstream 236912 7957836 ~ 7958231 (-) True G104695
XR_006252682.1 other upstream 323898 8044822 ~ 8050710 (-) False nipsnap2
unassigned_transcript_1962 other upstream 1283495 9004419 ~ 9004492 (-) True trnat-agu_3
unassigned_transcript_1963 other upstream 1290343 9011267 ~ 9011340 (-) True trnat-ugu_1
unassigned_transcript_1964 other upstream 1290643 9011567 ~ 9011640 (-) True trnat-agu_4

Expression Profile