RNA id: XM_043259578.1


Basic Information

Item Value
RNA id XM_043259578.1
length 1512
RNA type mRNA
GC content 0.35
exon number 6
gene id trappc6bl
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 8529536 ~ 8533296 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTTCTTTCTTTCAGATATGGCAGATGACGCTTTGTTTGAATTCCTCCATATGGAGATTGTCGCTCACATTTACAAGGAGCAGGCGACGCGGGAGGACATTGATAAGGAGAGAGTGACGTGTGTCTCCACTCTAGAGGCGATGGGCTTCAGAGTTGGACAAGGACTGATTGAAAgATTTACAAAAGACTGCCCTACTTTCAAAGATGACTTGGACATAATGAAGTTCCTGTGTAAGGATTTCTGGAGCacgattttcaaaaaacaaattgaCAATTTGAGGACCAACCATCAGGGCACATACGTCTTACAAGATAATAAATTTGCCCTCCTAACTCAGTTTTCCAGTGGAAAGCAATACCTCGAAGAAGCACCTAAATACTTGGCCTTTTCCTGTGGGTTGATTCGAGGAGGTCTGTCTAACCTGGGCTTGGAGAGCGTCGTCACAGCGGAGGTTTCTTTAATGCCATCATgCAAATTTCAAGTTGTGATCCAGAAACTCTAGGACGGACTAAATGAGAGCTCAATGAGTTTCTTCAATTAAAACTTTGCGAATGTGAATGACATGGACCTAGATTGTAAATGTTTACAACATTGTATTTTCTATAACGCTGTTTGCAGTTTCAAGCATTTTAGCGAAAAAGATCCCATACGTTTCacttgtttaaattttttttttccataccaCATAAATTCAAAATCCTGTTTGGAAATGTTCTGAATGTCGTATTCTACCTCAGCTCCGCTTATTACAGATTGAATTGCTGTCACAGATAATTATGGAagcatattttcataaatatgacatttggtaactttttaatatttcatgaacTCATTTCTTACATGAACTTCTTGTCCACTTTTTTCCTTTGTCTGGATATGacgtttaaaatgttaaaatgacattttttttctacagcattattgtaaaagtaaataatgtaaatttggGACGGTTAAtagctgtagttttttttcaacCCAATTAACTAAAGCCATATCTGAAACCTAATTTATTgtttggaaacacacacacacacacacacacacaaataaaataaaatattgataatatggagaaaatgaatggattctggaagaacagcttttattgttgttgttgttgtttaaaaatatgtttatggtTTGGGTAAACTGGTTAAATAGAGGCTTGTGTTTTAACTAGTCAAGTTGTTGAGTTCACCAGAAGAGGGCAACCTTTGTCAGTCAGAAACATGTCATCTTGAGTAAAAGCtcataattatatttgatcataaaactttaaattgaaTGATCTTGTAAAAGCGTCTTGCACTTAAGGTAgtctgaaagttttttttttttttttacggctGGTACTTTAGTTTATTAAGGTGGAGGTTTTCTGTGAACTGTGTGCTTGTTTGTTGTATGATTATGGAGGGATTTatcattattcaataaatgaagGATAAAGAAAAACCTGTCATTTATTTAAGTTACcaatgcaataaatgcaatataataatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154738 lncRNA downstream 16092 8512082 ~ 8513444 (-) False zgc:114130
TU154733 lncRNA downstream 32930 8496392 ~ 8496606 (-) True G104794
TU154719 lncRNA downstream 113768 8401270 ~ 8415768 (-) False G104780
TU154718 lncRNA downstream 124774 8401270 ~ 8404762 (-) True G104780
TU154713 lncRNA downstream 133207 8395209 ~ 8396329 (-) False G104777
TU154749 lncRNA upstream 54166 8586628 ~ 8678323 (-) True G104808
TU154755 lncRNA upstream 63215 8595677 ~ 8702042 (-) True G104812
TU154777 lncRNA upstream 125251 8657713 ~ 8659728 (-) False LOC122359140
TU154778 lncRNA upstream 125251 8657713 ~ 8659728 (-) False LOC122359140
TU154751 lncRNA upstream 183933 8716395 ~ 8728987 (-) True G104809
XM_043258381.1 mRNA downstream 16077 8510382 ~ 8513459 (-) True zgc:114130
XM_043258605.1 mRNA downstream 148039 8352330 ~ 8381497 (-) True LOC122358760
XM_043259180.1 mRNA downstream 478826 8044822 ~ 8050710 (-) True nipsnap2
XM_043259761.1 mRNA downstream 505360 8018401 ~ 8024176 (-) True med17
XM_043258423.1 mRNA downstream 530403 7995583 ~ 7999133 (-) True trim59
XM_043259576.1 mRNA upstream 1236 8533698 ~ 8539752 (-) True si:ch211-116o3.5
XM_043259333.1 mRNA upstream 125226 8657688 ~ 8662864 (-) True LOC122359140
XM_043259328.1 mRNA upstream 230581 8763043 ~ 8769975 (-) False LOC122359137
XM_043259329.1 mRNA upstream 230581 8763043 ~ 8769975 (-) True LOC122359137
XM_043259331.1 mRNA upstream 243183 8775645 ~ 8779441 (-) True si:dkey-243k1.3
XR_006252682.1 other downstream 478826 8044822 ~ 8050710 (-) False nipsnap2
TU154597 other downstream 571305 7957836 ~ 7958231 (-) True G104695
TU154509 other downstream 889197 7639644 ~ 7640339 (-) False G104628
TU154511 other downstream 889197 7639644 ~ 7640339 (-) False G104628
TU154467 other downstream 957446 7569846 ~ 7572090 (-) True G104603
unassigned_transcript_1962 other upstream 471957 9004419 ~ 9004492 (-) True trnat-agu_3
unassigned_transcript_1963 other upstream 478805 9011267 ~ 9011340 (-) True trnat-ugu_1
unassigned_transcript_1964 other upstream 479105 9011567 ~ 9011640 (-) True trnat-agu_4
unassigned_transcript_1965 other upstream 480336 9012798 ~ 9012871 (-) True trnat-cgu_2
unassigned_transcript_1966 other upstream 480631 9013093 ~ 9013166 (-) True trnat-agu_5

Expression Profile