G111978


Basic Information

Item Value
gene id G111978
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13066293 ~ 13103228 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU165281
tttttttttttttttttcttttagtattttattggGTATATTTACAAACACCAACATGCATAGAGCTGATTCACAGGGAATTACAGAACTCAAGAGTTGGTACAGTACATAATAATGCTTTAGGTGTGCTACCAGCGATGGGCATTACCACACAGAGCTACGCAACTCATTACCACACAAAGGTACACACACaggagatagatagagagatagacaaGAGGAACCGATAGAAAGCAGATCAACTGTATGGTATATAAACCACAAACAATAAGCAcactatatttataatgtttttttcttcaaaacatatTAATGAAATTCAAATGTCACAAATATTAATTCACAGTCATAAGAAAAATGACAACTACAAGaactgaaaacaataataataaacaatgataATACTCattacaaaaaaggaaaaaaaaagaaagaaaaatcatgcATCATTGCAGTTTGCCCTGTGAGGTAAGACTATTACactaaatgtgattttattttattcatttatttatttttaaccaaaccCCTGCTGCTTGCTTGCTTCTCAAACCATACCAtttggtttcattttcttttaaaacagggTCATTAAAGCTCACGCCAATTACTAAATCTTCATTTTCTCCTAAACTATATCCTAAAAACTGTATCTGTCCCATGACATACATTAATTTTCAGTTGTAAGATtcatacttatatatatatatatacacagcaaTGTGAATTGGTTACTGCTACTGTAGCCCATAGCTTTTTTGCTATTGGTTGGAATAATCCAGAAGGCATATCGTCATGTGGTGTGATGGGCAAAACTGTGCTCCATGCAGACTGTATTCTTTCATTTTGTccgaatatatatttatggttaGCAGTGCCAAGTCAGAGTTGTGACAAAAATTCATACACGTGGGAAACACAGAGGGCTATTTAATGAACAGCAATAAGCAAGCTCCGTCTCAAATCACCTTCCCCGCTGCCGCCACTAAAATCCTGCCCCGTTCCTTTTAGCATTTATAGTCTGAGCGAAAGCATTTGTGCACACAAATAAGTTGTATTGATGAATACCTGACATTTGCTACACACATTCGTACACATTCATGCAGGTTTAGTATGTAAACCCCCGATTCAAAGCGTTATACGGATGCAGGATATCCATTCGAAAGAAAATCGTGAATGCTATCAATCATATATGGTTTCTCCAGCAACAAGCCTCATAAACAGTACAGTACAGAGTATGCATAGTCACTATCAAGCTCATGGTGATACAGATCTTACTACAGTAGCCATCACACTGTAAGAAATAGAAAAGAATCATCTACACACTACCACTCTAATACGTACATCGGACTGTTACCATTGAGAGTTACAATAATAACCATAAGAGAATAATAATGTCGGTTTTcaaacagaatgtttttttcctggCAAGGGAGATAATAAAAGGGAGCATATAAGGGCATTTTCAGGCAATAACAAGAGttcttttattaattgttgGTGTACAAATTAGGACAAtgaagtattaatattataaagaaTTTTGTTTATCCTTATCAATGTCATTTCAATTATCaagcagttattttttttagaccGATTAGCCAGTAATTACTGAACAgtagaatgaaaataaaacattaatcgCATAATAAATGACAGAGTTAATTTGAGTAAATCTGTCATATATGTACTAAGGCAGCCCCAAAGTAACCAAAACTCAAAGACGTGCTTGTCTTTGGGCTGAtgatatggtaaaaaaaatttaaggggTTTTACACACAGTTTCGGATGAAAATACGTCAAATATGCATATTGGacttaaaattataatgaaatgctgttttacgaATAAACTTATCTTTGCGCTGAGCTTTTTAAGTAAGATTCCGGCCGAGCTGTTTGTTATGGCAACACCTAATAATAAATACCCTATGATGGTTTTATTTTCGTTAAACTTGATTCTTATTCATTACCCATTTCTATTTCttgtttatctgtctatctatctttgtaaaatctaaatatatatttatgatttatacaGTTTCCTATATATCACAGAAAATATTCCAGACGTCACAAACCAGGCAACGAGGGTCAGagataaacagataaacacataACACAGCTACTAATAACTACATCTATATATGGTCTTTTTCCTTGTACATTATCCCCTGATGTTCTTTCGCACAAACATACAGGCAAATTTAAAGATAAGTCACATGATAAGCGAAGCATAACCAATGGGAACAAGGCCTTCCTTGTGACCTTGACGACATCGAATCCAGTCGTGGTCCACGCCTCCCAACAGGACAAGCTCCTCCCCCTTCCTGAAGCTCAGCTCTGTTCCGGCGCCTGTGTGGTCACACAGCGTTCGGA

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165281 True 2385 lncRNA 0.35 2 13066293 13103228

Neighbor

gene id symbol gene type direction distance location
rnf115a rnf115,LOC107685578,LOC107743193,LOC107598434,LOC107596622,LOC107707171 coding upstream 10219 13048819 ~ 13056074 (+)
itga10 itga10,LOC107743189,LOC107596623,LOC107685574,LOC107673033,LOC107707172,LOC107598435 coding upstream 23772 13007935 ~ 13042521 (+)
crabp2a crabp2a,LOC107598461,LOC107673000,LOC107596745,LOC107685576,LOC108437453,LOC108272314 coding upstream 64671 12995877 ~ 13001622 (+)
dscc1 dscc1,LOC107743187,LOC107707164,LOC107596707 coding upstream 86658 12976720 ~ 12979635 (+)
mrpl13 mrpl13,LOC107673031,LOC107743186,LOC107707178,LOC107685572,LOC107596626 coding upstream 227781 12825677 ~ 12838512 (+)
rcvrn2 rcvrn2,LOC107692546,LOC107737906,LOC107750003,LOC107673041,LOC107598428,LOC108266978,LOC105905461 coding downstream 27169 13130397 ~ 13135072 (+)
cdc42ep5 LOC107750006,LOC107692549,LOC107673022,LOC107737909,LOC107549454,LOC107598423 coding downstream 45027 13148255 ~ 13150690 (+)
leng9 LOC107549457,LOC107750010,LOC107692553 coding downstream 68117 13171345 ~ 13176239 (+)
ttyh1 LOC107598419,LOC107737914,LOC107549458,LOC107673038,LOC107750018 coding downstream 74297 13177525 ~ 13200626 (+)
ube2s ube2s,LOC107750012,LOC107549462,LOC107692555,LOC107737918,LOC107598418 coding downstream 102909 13206137 ~ 13210102 (+)
G111822 NA non-coding upstream 465199 12598914 ~ 12601094 (+)
G111810 NA non-coding upstream 508715 12556489 ~ 12557578 (+)
G111732 NA non-coding upstream 697693 12366968 ~ 12368600 (+)
G111667 NA non-coding upstream 1082655 11983400 ~ 11983638 (+)
G111604 NA non-coding upstream 1190024 11875703 ~ 11876269 (+)
G111987 LOC107692542,LOC107596619 non-coding downstream 3058 13106286 ~ 13107154 (+)
G111998 NA non-coding downstream 37985 13141213 ~ 13146421 (+)
G111993 NA non-coding downstream 55574 13158802 ~ 13160948 (+)
G112011 NA non-coding downstream 166650 13269878 ~ 13270193 (+)
G112006 NA non-coding downstream 201354 13304582 ~ 13308763 (+)
nbeal2 nbeal2,LOC107596634,LOC107752840,LOC107685597,LOC107743212,LOC107673027,LOC107581539 other upstream 509935 12500071 ~ 12556358 (+)
LOC122359987 LOC107685557 other upstream 589785 12474517 ~ 12476508 (+)
LOC122360650 LOC107685555,LOC107743206,LOC107596715 other upstream 675508 12379703 ~ 12390785 (+)
LOC122360824 dnah11,dnah9,LOC107596639,LOC107685550,LOC107743202,LOC107740597,LOC107677540 other upstream 928447 12106111 ~ 12137846 (+)
LOC122359964 pde11al,LOC107743218,LOC107684552,LOC103364058,LOC107685581,LOC107596730,LOC107550795,LOC107744711,LOC108441531 other upstream 1524054 11525296 ~ 11542239 (+)
mfap5 mfap5,LOC107692584,LOC107549447,LOC107672984,LOC107598402,LOC107744296,LOC107724932 other downstream 427941 13531169 ~ 13544412 (+)
LOC122360452 cox6b2,LOC107744291,LOC107598404,LOC107692571,LOC107549480,LOC108432349,LOC108270780 other downstream 503379 13606607 ~ 13609407 (+)
slc2a3b LOC107692573,LOC107724776,LOC107672969,LOC107744290,LOC107598389 other downstream 508021 13611249 ~ 13619347 (+)
zgc:158701 LOC107598451,LOC107671172,LOC107755974 other downstream 761393 13864621 ~ 13867229 (+)
LOC122360840 LOC107582135 other downstream 2175816 15279044 ~ 15282980 (+)

Expression


Co-expression Network