LOC122359987 (LOC107685557)


Basic Information

Item Value
gene id LOC122359987
gene name LOC107685557
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 12474517 ~ 12476508 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU164993
GAGCACAGCGAACACATGCTGAGCGGaggttttgtcattttgtcttATATCAAAATCACAACAACTTGTATTTAAATGCTAGTTTAGTAGCTTGACGTTTATCAGTTGCTATGTCTGCGCTGTCACACGCTGTGCTAGACTTCACTACTCAGGGCATTGATGGATTTAATAACGGAGTTTACCACAGCCATGTCTTGTGTGATTTTGTCTGTCTCATCATTGCATGCTGCTTATCGGCTCTTCAAGGACCACAGAGCCTCATCGGTGGGCTTCTtcctgattggcttttcctCTGTCCTTTCGGCCTTTTCTCCCTTTAACCAAACTATCAAATCGCTCCAGAACGACGCAGAATGGGCAGatgcttttatccaaagcgacttacaaatgaggaaaagAGCAAGCAATTCATCATAAACTCTTTCTCCTGCTGAATACAAAACAGGATATTTTGTTCAGTCACTGCAGGTACATATAGCTTGTGTTCTATAACGCTGCTTAAAAGATGCTTAGTATTATATGTTTGTGCAGAGGACGGGTTTATTCAAACAATGGAGCACAGAAAAGAAACCTTACTGTATGAtcttacaatttatttttatttaaatatatatttttttaacctgaATTGACAAGTTTGATAAATAAGTCGCTAACTTGTAATTCAAAAGTGGGATTTTGCATGCAA
>XM_043260254.1
TAGAGGGTGCAGCACACGCTCTACCTTCTGGACGCAGAAGAGCACACACTTCCTGTGCTCGCTCGAGCACAGCGAACACATGCTGAGCGGaggttttgtcattttgtcttATATCAAAATCACAACAACTTGTATTTAAATGCTAGTTTAGTAGCTTGACGTTTATCAGTTGCTATGTCTGCGCTGTCACACGCTGTGCTAGACTTCACTACTCAGGGCATTGATGGATTTAATAACGGAGTTTACCACAGCCATGTCTTGTGTGATTTTGTCTGTCTCATCATTGCATGCTGCTTATCGGCTCTTCAAGGACCACAGAGCCTCATCGGTGGGCTTCTtcctgattggcttttcctCTGTCCTTTCGGCCTTTTCTCCCTTTAACCAAACTATCAAATCGCTCCAGAACGACGCAGAATGGGCAGGTCAATCACTCGGTCCTGCTCTTATTACTTTTGACTTCTTGTGGCTAAGCGAGGACCACATCACTGCTCGCGTCCTCCTGATTGGCTCTACTTTTTTCATAATGCTCTCTGATTGGTTATCCTCAGACGGGTTGGTCCTTATGTCACGCTGCCTGGCATTTTCCACCCTCTCCTGTTCATTGACGGTGTGTGCgtttgctgaaaatacagcaggGGCGGTAGGGAGTGTTGCCCTCGGTCTGCCTTTATTAGTTTCCCCAAGGACCAGATCTAGGTCTTTGGGTTCCCTCTCGATGCCTACAGAAGGTCTTCTCAGCTGGATCCTCAAAGTAATCGTGGCATTAGGATGCTGGACCACTAGGAAGGCTCTCAATAAATACCTGTTTGACTTAAAAGGCTGGGACTGACTAAAGCAGGGGTCGCCAAAGACAGCAGAGAACCACAAAATGCTACTTTCGTGCTCAGATCATTATCAGGCTTACTTAGTGTGTTACTTAATAAGCTACTTAATAAGCTAACATTATATCGTAATGTACTACAGAAACCGTAGGGTATTTAACGTTTGTAATCAGATGATAGAGTTTGCTTATAACATGAAATCCATTTCACTGACATTGAGAGCTAGTAAAATCCATGAGCGGTGAATAAATTGTTTTAGCATCTACAACAATGAAATCTTTGTAAAGAAAGAATGGGACTCTGTTTAAAGCAGCGTCGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC107685557

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164993 False 688 lncRNA 0.39 4 12474581 12476508
XM_043260254.1 True 1143 mRNA 0.45 3 12474517 12476003

Neighbor

gene id symbol gene type direction distance location
LOC122360829 LOC107685595,LOC107743211,LOC107596711 coding upstream 3087 12465219 ~ 12471430 (+)
tnxba LOC107581611 coding upstream 10129 12455692 ~ 12464388 (+)
c4b LOC107752837,LOC107662667,LOC107581612 coding upstream 24387 12433949 ~ 12450130 (+)
LOC122360827 NA coding upstream 70112 12402516 ~ 12404405 (+)
fhod3b LOC107743170,LOC107685591,LOC107752839,LOC107581616 coding upstream 108533 12229223 ~ 12365984 (+)
si:ch211-257p13.3 si:ch211-257p13.3,LOC107685558,LOC107596636,LOC107743172,LOC107752836,LOC107581541,LOC107673049,LOC108271642 coding downstream 2040 12478548 ~ 12491916 (+)
nradd nradd,LOC107685559,LOC107743178,LOC107752834,LOC107673039,LOC107581538,LOC107596749 coding downstream 86240 12562748 ~ 12574040 (+)
rbm12bb LOC107596630,LOC107685561,LOC107673037,LOC107752831,LOC107581533 coding downstream 126233 12602741 ~ 12607176 (+)
gra LOC107743180,LOC107581534,LOC107685563,LOC107596633,LOC107752832 coding downstream 130822 12607330 ~ 12611688 (+)
upp1 upp1,LOC107685619,LOC107743234,LOC107596632,LOC107752846,LOC107672999,LOC108411965 coding downstream 136997 12613505 ~ 12616783 (+)
G111732 NA non-coding upstream 105917 12366968 ~ 12368600 (+)
G111667 NA non-coding upstream 490879 11983400 ~ 11983638 (+)
G111604 NA non-coding upstream 598248 11875703 ~ 11876269 (+)
G111588 NA non-coding upstream 601570 11871873 ~ 11872947 (+)
G111595 NA non-coding upstream 618046 11855009 ~ 11856471 (+)
G111810 NA non-coding downstream 79981 12556489 ~ 12557578 (+)
G111822 NA non-coding downstream 122406 12598914 ~ 12601094 (+)
G111978 NA non-coding downstream 589785 13066293 ~ 13103228 (+)
G111987 LOC107692542,LOC107596619 non-coding downstream 629778 13106286 ~ 13107154 (+)
G111998 NA non-coding downstream 664705 13141213 ~ 13146421 (+)
LOC122360650 LOC107685555,LOC107743206,LOC107596715 other upstream 83732 12379703 ~ 12390785 (+)
LOC122360824 dnah11,dnah9,LOC107596639,LOC107685550,LOC107743202,LOC107740597,LOC107677540 other upstream 336671 12106111 ~ 12137846 (+)
LOC122359964 pde11al,LOC107743218,LOC107684552,LOC103364058,LOC107685581,LOC107596730,LOC107550795,LOC107744711,LOC108441531 other upstream 932278 11525296 ~ 11542239 (+)
G111415 LOC107757440,LOC107697648,LOC107574906,LOC107745056 other upstream 1263250 11204957 ~ 11211267 (+)
LOC122360811 cobl,LOC107746964,LOC107684220,LOC107551210 other upstream 1623079 10826603 ~ 10851438 (+)
nbeal2 nbeal2,LOC107596634,LOC107752840,LOC107685597,LOC107743212,LOC107673027,LOC107581539 other downstream 23563 12500071 ~ 12556358 (+)
mfap5 mfap5,LOC107692584,LOC107549447,LOC107672984,LOC107598402,LOC107744296,LOC107724932 other downstream 1054661 13531169 ~ 13544412 (+)
LOC122360452 cox6b2,LOC107744291,LOC107598404,LOC107692571,LOC107549480,LOC108432349,LOC108270780 other downstream 1130099 13606607 ~ 13609407 (+)
slc2a3b LOC107692573,LOC107724776,LOC107672969,LOC107744290,LOC107598389 other downstream 1134741 13611249 ~ 13619347 (+)
zgc:158701 LOC107598451,LOC107671172,LOC107755974 other downstream 1388113 13864621 ~ 13867229 (+)

Expression


Co-expression Network