LOC122360811 (cobl,LOC107746964,LOC107684220,LOC107551210)


Basic Information

Item Value
gene id LOC122360811
gene name cobl,LOC107746964,LOC107684220,LOC107551210
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 10826603 ~ 10851438 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU164351
CAGAATTCCTAGCTCGGGCTGCCGTTGAGCGCGCGCTCGAGAGACGCGGGAACGGCGCTGCCTGGTGGACGGATTAGACCAGGATCGTGAACTCCAGTGCCGCTGTTGTCTGTTTATGAAGCCGAATCCTCGTGACACTTATATGAATAAGTGTGAACCTGAATTCCGATGTCCCCGCCTGGACGTACGAGTAATAAATTGCCTTGATACAAAGCGGATTTAGTTTATGACAGATGAATTTTGGAGACGCTACCATCAGACCTCCTGTAGGGAGGAGAATGAAGGCCAAGGCCCCACCTCCACCTCAACCCCTCAGCCTGCCCCCGGAGGATCTTCCGTAATGCTGTTCCTGATGGAGGAGGATCTTCAATGGGAGACAGCAAGGAAAACATGCTTCGACCCTCTGTGGACCTCCATATCAGTCTGCCTTCAGGGTATCAGACCACCGTCAATGTGGATGGCAGAAAAGCTCTGATGGATTTGTTGGTGGATCTGTGCAGTCAGTATCATCTGAATCCAACATATCATACCCTGGAGCTGCTGTCACCCGATGCTCAACCTGTCATTTTTAAGCCCAACGCCCTGCTGGCGCCCTGGACGTCTCCTGCGCCTGATCAAAGAACGAGTGCTGGAGGACAAGGTGATCCGGAAACCTCCACCCAAGATGCCAGAGAAAACTGTGCGTTTGGTGGTAAACTATCACCGCAGTCAGAAAGCAGTTGTTCGTGTAAATCCACTGGTCCCACTGCATACCCTGGTGCCTGTGATTTGTCAGAAGTGCGAGTTTGACTCGGGCCATGTCTTGCTGTTCAAAGACAATATCAGCCATCAACAGCTGGACCTGGACAAGTGCCTGAGCGAGCTGGGTATCAGAGAACTCTATGTGCTGGATCAAACACTAGCTGAATCTCTTCACTCCAACAGTCTGAGTGGATCAGAGAAAAAGAGCCTGCTGGGCTTCCTCAAGTTTAATCGCAGGAAATCAAAGG
>TU164352
GCTCGAGGTCCAAGCATTTTGGCGTTCTCACATGCTTTATGCTTCTCATTGTCTTCGAGGATCATAGACGTTCGCCTTCTGTGTGGTTCCTGGACACGGACTACAGACAGACTCTCACGGCTGCTTTGACAGTAGAGGAGAATGAAGGCCAAGGCCCCACCTCCACCTCAACCCCTCAGCCTGCCCCCGGAGGATCTTCCGTAATGCTGTTCCTGATGGAGGAGGATCTTCAATGGGAGACAGCAAGGAAAACATGCTTCGACCCTCTGTGGACCTCCATATCAGTCTGCCTTCAGGGTATCAGACCACCGTCAATGTGGATGGCAGAAAAGCTCTGATGGATTTGTTGGTGGATCTGTGCAGTCAGTATCATCTGAATCCAACATATCATACCCTGGAGCTGCTGTCACCCGATGCTCAACCTGTCATTTTTAAGCCCAACGCCCTGCTGGCGCCCTGGACGTCTCCTGCGCCTGATCAAAGAACGAGTGCTGGAGGACAAGGTGATCCGGAAACCTCCACCCAAGATGCCAGAGAAAACTGTGCGTTTGGTGGTAAACTATCACCGCAGTCAGAAAGCAGTTGTTCGTGTAAATCCACTGGTCCCACTGCATACCCTGGTGCCTGTGATTTGTCAGAAGTGCGAGTTTGACTCGGGCCATGTCTTGCTGTTCAAAGACAATATCAGCCATCAACAGCTGGACCTGGACAAGTGCCTGAGCGAGCTGGGTATCAGAGAACTCTATGTGCTGGATCAAACACTAGCTGAATCTCTTCACTCCAACAGTCTGAGTGGATCAGAGAAAAAGAGCCTGCTGGGCTTCCTCAAGTTTAATCGCAGGAAATCAAAGACTGAAGATCAGTCCTCTGAGGACATGGACAGTCTTGATGATGATAGTGTTGTTGACATTGCAGACACTAACATTAATG
>XM_043261673.1
ATGCTCAACCTGTCATTTTTAAGCCCAACGCCCTGCTGGCGCCCTGGACGTCTCCTGCGCCTGATCAAAGAACGAGTGCTGGAGGACAAGGTGATCCGGAAACCTCCACCCAAGATGCCAGAGAAAACTGTGCGTTTGGTGGTAAACTATCACCGCAGTCAGAAAGCAGTTGTTCGTGTAAATCCACTGGTCCCACTGCATACCCTGGTGCCTGTGATTTGTCAGAAGTGCGAGTTTGACTCGGGCCATGTCTTGCTGTTCAAAGACAATATCAGCCATCAACAGCTGGACCTGGACAAGTGCCTGAGCGAGCTGGGTATCAGAGAACTCTATGTGCTGGATCAAACACTAGTTCTCCAGCCTAAAATGGCTTCGACACCTGCCCTGAACTACTCAGCTGAATCTCTTCACTCCAACAGTCTGAGTGGATCAGAGAAAAAGAGCCTGCTGGGCTTCCTCAAGTTTAATCGCAGGAAATCAAAGACTGAAGATCAGTCCTCTGAGGACATGGACAGTCTTGATGATGATAGTGTTGTTGACATTGCAGACACTAACATTAATATTTCAGTCTAA

Function

symbol description
cobl Predicted to enable actin monomer binding activity. Acts upstream of or within cilium assembly and embryonic organ morphogenesis. Predicted to be located in several cellular components, including cytoskeleton; cytosol; and ruffle. Is expressed in several structures, including Kupffer's vesicle; midbrain hindbrain boundary neural rod; nervous system; pronephros; and trunk. Orthologous to human COBL (cordon-bleu WH2 repeat protein).

GO:

id name namespace
GO:0060088 auditory receptor cell stereocilium organization biological_process
GO:0003146 heart jogging biological_process
GO:0060271 cilium assembly biological_process
GO:0001947 heart looping biological_process
GO:0001726 ruffle cellular_component
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164351 True 989 TUCP 0.51 6 10826603 10851029
TU164352 False 930 TUCP 0.50 6 10843293 10851369
XM_043261673.1 False 573 mRNA 0.49 6 10847018 10851438

Neighbor

gene id symbol gene type direction distance location
LOC122360810 triob,LOC107746974,LOC107751902,LOC108429234 coding upstream 26382 10762751 ~ 10800221 (+)
LOC122360809 LOC107692009,LOC107742337,LOC107591288,LOC107709507,LOC107662260 coding upstream 177502 10621027 ~ 10649101 (+)
taf2 taf2 coding upstream 334724 10471030 ~ 10491879 (+)
LOC122361027 LOC107566274,LOC107757437,LOC107697650 coding upstream 359373 10465273 ~ 10467230 (+)
ca14 LOC107757442,LOC107566279,LOC107691873 coding upstream 368184 10424400 ~ 10458419 (+)
LOC122361031 LOC107684222,LOC107746965,LOC107551211,LOC107704084,LOC107751910,LOC107601660 coding downstream 32787 10884225 ~ 10886466 (+)
LOC122360813 LOC107746978,LOC107684223,LOC107551206,LOC107751909,LOC107704083,LOC107601659 coding downstream 38882 10890320 ~ 10891979 (+)
LOC122360815 adcy2a,LOC108429235,LOC103367001,LOC108272199 coding downstream 106867 10958305 ~ 10978258 (+)
LOC122360820 fam188a,LOC107738860,LOC107689882,LOC107681582,LOC107549210,LOC107717794,LOC107593720 coding downstream 561429 11412867 ~ 11430889 (+)
LOC122360821 NA coding downstream 610165 11461603 ~ 11463812 (+)
G111271 NA non-coding upstream 255635 10570659 ~ 10570968 (+)
G111261 NA non-coding upstream 273775 10552272 ~ 10552828 (+)
G111250 NA non-coding upstream 333746 10492369 ~ 10492857 (+)
G111232 NA non-coding upstream 423563 10400269 ~ 10403040 (+)
G111230 prpf3,LOC107566278,LOC107555801,LOC107572828,LOC107677690 non-coding upstream 429500 10395908 ~ 10397103 (+)
G111394 NA non-coding downstream 308686 11160124 ~ 11160804 (+)
G111417 enpp2,LOC107697648,LOC107574906,LOC107681346,LOC107757440,LOC107745056,LOC107574778,LOC106573026 non-coding downstream 362348 11213786 ~ 11222969 (+)
G111438 NA non-coding downstream 409654 11261092 ~ 11261370 (+)
G111456 NA non-coding downstream 481716 11333154 ~ 11333678 (+)
G111484 LOC107581612,LOC107752837,LOC107662667 non-coding downstream 589753 11441191 ~ 11443232 (+)
LOC122361026 LOC107708300 other upstream 98143 10670957 ~ 10728460 (+)
enpp2 enpp2,LOC107757440,LOC107697648,LOC107574906,LOC107745056,LOC107681346 other upstream 317028 10493034 ~ 10509575 (+)
G111161 LOC107746965,LOC107684222,LOC107551211 other upstream 752552 10073675 ~ 10074051 (+)
G111122 NA other upstream 862217 9963105 ~ 9964386 (+)
ctnnb1 ctnnb1,LOC107570993,LOC107701997,LOC107751892,LOC107748497 other upstream 1439212 9356432 ~ 9387391 (+)
G111415 LOC107757440,LOC107697648,LOC107574906,LOC107745056 other downstream 353519 11204957 ~ 11211267 (+)
LOC122359964 pde11al,LOC107743218,LOC107684552,LOC103364058,LOC107685581,LOC107596730,LOC107550795,LOC107744711,LOC108441531 other downstream 673858 11525296 ~ 11542239 (+)
LOC122360824 dnah11,dnah9,LOC107596639,LOC107685550,LOC107743202,LOC107740597,LOC107677540 other downstream 1254673 12106111 ~ 12137846 (+)
LOC122360650 LOC107685555,LOC107743206,LOC107596715 other downstream 1528265 12379703 ~ 12390785 (+)
LOC122359987 LOC107685557 other downstream 1623079 12474517 ~ 12476508 (+)

Expression


Co-expression Network